rs241497347 SNP Detail

Summary

• ID
  rs241497347
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:10654398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCATGTGCC ACCACGCCCA
  GCAGGTTTTC TGAGTCTTAA GAGTTGTTTC TAATACCCTC TAAGGAGATG CTGATATTGC
  AGGGTTTGAG GCTGCCCTTT GAGCTACTGC AGTTCTTGCA CTGTGGTTCT GATAGCTTGA
  CTCTAGCATC TGGTCCAATG CCTGGCACTT GTGTGTTCTG AGAAGCAGAT GTTCTGAGAC
  M
  GGCATCAGGT ACCTGGAGCC TCATCTCATT AGGAAACACA TATCATACAC AGGGCCTCGT
  GAACTGCGTG GTTGCACCTG TGACCCAGAT AGACAAGGCC TGCCTATACT TGACTCTGAA
  GCTTCAACAC AGGCTCCAGG AGACTTCTAA AGGAAGCCTA CAGATTCAGC AGGCCTGCCT
  TTCCATGGCT TCCTTCTCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395387240	MGP_WTSI_16_10836627	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241497347					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395387240	MGP_WTSI_16_10836627	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:10654398 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7956	CpG island 7956	884 bp distal
Gm17913	predicted gene, 17913	1418 bp upstream
Gm26822	predicted gene, 26822	within coordinates
Rmi2	RecQ mediated genome instability 2	within coordinates
Rr370049	regulatory region 370049	within coordinates
Rr404679	regulatory region 404679	1387 bp downstream
Rr511605	regulatory region 511605	1465 bp distal
Rr511606	regulatory region 511606	1363 bp proximal
Tssr137059	transcription start site region 137059	1450 bp downstream
Tssr137060	transcription start site region 137060	1441 bp downstream
Tssr137061	transcription start site region 137061	1030 bp downstream
Tssr137062	transcription start site region 137062	1000 bp downstream
Tssr137063	transcription start site region 137063	1446 bp upstream
Tssr139967	transcription start site region 139967	1165 bp upstream
Tssr139968	transcription start site region 139968	17 bp upstream