rs241498758 SNP Detail

Summary

• ID
  rs241498758
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:95722706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCAATCC GCATGCCAGT
  ACCAGATTCC TCGCGGCAGA CCTATGATGC TCTCAGAAGA CAGCTCTAGG TCTTGATCTT
  GCTTCAGCCA ACGCAACCCT ACACTACCGC TGCGCTGGCT GCGCCTTGCT TCCTTCCCCC
  TCTCCACCCC CACCCCACCC CCGCCCACCA GACACCCCCC ACCCACCCAA AGGAAGAAAA
  A
  GTCAGAAGGA ACTACCGCCT CCTGCTGGTA GAACGAGGTA GAAGAACCGA CCACTGACCT
  CGGAGAGTGT GAAAAATCCT AGCACTCCAG CAAGAGACCA GGGACTTCAC CAAAGTCGTC
  CCCTCCCCCC CCGCACCCCT CCCCCCTTGC ATTCCCCTTT GCCCTTATGG AACAGAAAGC
  CATGTTTTTA AGCAGAGCCA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384356222	MGP_WTSI_11_95693194	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241498758					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384356222	MGP_WTSI_11_95693194	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:95722706 () rs orientation: forward

Symbol	Name	Function Class
Abi3	ABI family member 3	within coordinates
Cpgi3603	CpG island 3603	315 bp distal
Cpgi3604	CpG island 3604	1791 bp proximal
Phospho1	phosphatase, orphan 1	within coordinates
Rr369341	regulatory region 369341	1308 bp upstream
Rr455202	regulatory region 455202	1178 bp distal
Rr455203	regulatory region 455203	12 bp proximal
Tssr3654	transcription start site region 3654	1336 bp downstream
Tssr104394	transcription start site region 104394	1112 bp downstream
Tssr104395	transcription start site region 104395	543 bp downstream
Tssr104396	transcription start site region 104396	507 bp downstream
Tssr104397	transcription start site region 104397	342 bp downstream
Tssr110283	transcription start site region 110283	57 bp upstream