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rs241504619 SNP Detail
Summary
  • ID
    rs241504619
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr18:82602482 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GAGCCCTCCC CGCTCAGCCT
TCCCGAATCC TGCCCTCGGC TTCTTAATAT AACTGCCTTA AACTTTTAAT TCTACTTGCA
CCGATTAGCT AGTTAGAGCA GACCCTCTCT TAATCCCGTG GAGCCGTGAT CGCGGTGGGG
CCAGGCCCAC GGCACCCCGA CTGGTTAAAA CTATTCGTCC CTTTTCGTTT GAAGATTGAG
W
TTTCTCGGGG TCTTCTCAGC CCTGACTTGT TCCCCGTGCA CCTTGTTCGA CTCCGGAGGT
TCAGGTGCAC GGACACCCTT CCAAGTTCAC CCCTACTCCA TCCTCAGACT TTTCACGGTG
AGGCACACCC CTCCAGCTTC CGTGGGCACT GCGGATAGAC AGGCACACCG CCAAGGAGCC
AGAGAGCATG GCGCAGGGGA                                            

W = A/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss401436738 MGP_WTSI_18_82753749 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs241504619 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss401436738 MGP_WTSI_18_82753749 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr18:82602482 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Gm58829 predicted gene, 58829 265 bp downstream
Mbp myelin basic protein within coordinates
Rr541827 regulatory region 541827 222 bp distal
Tssr152152 transcription start site region 152152 232 bp downstream
Tssr152153 transcription start site region 152153 108 bp downstream
Tssr152154 transcription start site region 152154 85 bp downstream
Tssr152155 transcription start site region 152155 49 bp downstream
Tssr152156 transcription start site region 152156 4 bp upstream
Tssr152157 transcription start site region 152157 55 bp upstream
Tssr152158 transcription start site region 152158 112 bp upstream
Tssr152159 transcription start site region 152159 142 bp upstream
Tssr152160 transcription start site region 152160 192 bp upstream
Tssr152161 transcription start site region 152161 209 bp upstream
Tssr152162 transcription start site region 152162 225 bp upstream
Tssr152163 transcription start site region 152163 250 bp upstream
Tssr152164 transcription start site region 152164 290 bp upstream
Tssr152165 transcription start site region 152165 343 bp upstream
Tssr152166 transcription start site region 152166 409 bp upstream
Tssr152167 transcription start site region 152167 424 bp upstream
Tssr152168 transcription start site region 152168 459 bp upstream
Tssr152169 transcription start site region 152169 520 bp upstream
Tssr152170 transcription start site region 152170 601 bp upstream
Tssr152171 transcription start site region 152171 661 bp upstream
Tssr152172 transcription start site region 152172 768 bp upstream
Tssr152173 transcription start site region 152173 791 bp upstream
Tssr152174 transcription start site region 152174 809 bp upstream
Tssr152175 transcription start site region 152175 832 bp upstream
Tssr152176 transcription start site region 152176 1041 bp upstream
Tssr152177 transcription start site region 152177 1209 bp upstream
Tssr154083 transcription start site region 154083 127 bp upstream
Tssr154084 transcription start site region 154084 73 bp upstream
Tssr154085 transcription start site region 154085 156 bp downstream
Tssr154086 transcription start site region 154086 711 bp downstream
Tssr154087 transcription start site region 154087 926 bp downstream
Tssr154088 transcription start site region 154088 966 bp downstream
Tssr154089 transcription start site region 154089 1077 bp downstream
Tssr154090 transcription start site region 154090 1149 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory