rs241508182 SNP Detail

Summary

• ID
  rs241508182
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:146789273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACTGGGAG AATTCAATGC
  TTCTAGCCTC CATGGGTACA CACACATACT ACACATAATT AAACAAAATA ACAAAAATAG
  CTGGGTGTGG TGGTACACAT CTTTGATTTG AATAGTTTGA GGCGGAGGCA GGCAGATAGC
  TGTTCAAGAC CAGTCTGGTC CACACACAGT TTCACGACAG GACAAACAAC AACAACAAAC
  Y
  CCAACAAAAA TAATAATAAA AAATCTTTAA AAAGCAGGTT ATTGCTGAGT GTGGGCCTGT
  AACCTCAGCT ATTAGGAAGG CTAAGGTAAA AAGATAACAA TTTGAAGACC AGCCTTGATA
  TGTGTCACAG CGGGGGGGGG GAGAGGGGGG GAAAACCTCG AAAAAATATA AATAGTAAAA
  CATTTACCCC CTCCCTCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322083550	CHEV_6_146836297	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241508182					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:146789273 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18173	CpG island 18173	251 bp proximal
Gm66444	predicted gene, 66444	227 bp downstream
Ppfibp1	PTPRF interacting protein, binding protein 1 (liprin beta 1)	712 bp upstream
Tssr59600	transcription start site region 59600	706 bp upstream
Tssr59601	transcription start site region 59601	818 bp upstream
Tssr59602	transcription start site region 59602	857 bp upstream