rs241517347 SNP Detail

Summary

• ID
  rs241517347
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:9066849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCT TCCTTCCTTC CTTCCTTCCT
  Y
  CCTCCCTCCC TCCCTCCCTC CCTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323555397	CHEV_11_9016852	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241517347					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:9066849 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2578	CpG island 2578	1503 bp proximal
Rr385585	regulatory region 385585	within coordinates
Rr442635	regulatory region 442635	352 bp distal
Rr442636	regulatory region 442636	764 bp proximal
Rr442637	regulatory region 442637	1669 bp proximal
Tssr3423	transcription start site region 3423	1249 bp upstream
Tssr3424	transcription start site region 3424	1285 bp upstream
Tssr100322	transcription start site region 100322	1103 bp upstream
Tssr100323	transcription start site region 100323	1149 bp upstream
Tssr100324	transcription start site region 100324	1221 bp upstream
Tssr100325	transcription start site region 100325	1687 bp upstream
Tssr100326	transcription start site region 100326	1722 bp upstream
Tssr100327	transcription start site region 100327	1770 bp upstream
Upp1	uridine phosphorylase 1	1254 bp upstream