rs241535615 SNP Detail

Summary

• ID
  rs241535615
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78431203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCTGTTT CCTTTGCTCC
  TCACATTCGC CTAAACCCAA GCTCATCAGC AGTTCCTCTG CTCCTCCTAG CCAGTCAGCC
  TACTAACACT AACATGTAGT TTCCTTTACC AGCTTCTCAG GTGGACCCCC AAGTCTGGGA
  CGTCCAGAAC CCTCTGTTGC TAAACACCAT TCTCCTGTTG TCATCCAGTT CCTGGACTCT
  M
  CCAGGTACAT CACCCAAGCT CAATGCCCTC TCTCTCTCCA GAGCCTCAGG GGACTTAAGC
  CCATCATTTC TGACTTCTTA AGGAAAAAAC TCCTTCACCC CACCTCTTCC CCCTTTAACA
  CCCCTATTCT AGGGTGTGGT GTTGCACACC TTTAATCCCA GCACTTGGGA GGCAGAGGCA
  GGCAGATTTC TGAGTTAGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/2J	I/LnJ	JF1/MsJ	LEWES/EiJ	LP/J	NZW/LacJ	SJL/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss378159150	MGP_WTSI_9_78371728	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	C	C	C	C	C	A	C	C	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/2J	I/LnJ	JF1/MsJ	LEWES/EiJ	LP/J	NZW/LacJ	SJL/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs241535615					SNP	A	A	A	A	A	A	A	A	A	A	A	C	C	C	C	C	A	C	C	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378159150	MGP_WTSI_9_78371728	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78431203 () rs orientation: forward

Symbol	Name	Function Class
Gm47430	predicted gene, 47430	1764 bp downstream
Gm69163	predicted gene, 69163	1098 bp upstream
Rr383643	regulatory region 383643	522 bp upstream