rs241541908 SNP Detail

Summary

• ID
  rs241541908
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4643723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCGCCTATC GCTGGTGGCG
  ACCGGGTTCC GGGCTTTCCT TAGGGGCATC TGGGCTGGGT GCGCGTTGCC TTGGGGACCT
  ATTTTATTTT GGCTTAGTTG ACTTTTCTTT TCTTTCTTTC TTCCTTTCTT TTCTTTTTCC
  TCCTTGGTCA GGGTTGCTGC AGAGTGTCAG GTGAGCCGCA TCCCGGTGCG TCAAAGTAGC
  T
  GGAGTCACGA GAGGACAGTG GGCGGATGCT TGGCGTCCAC TGCTCGCGTT ATAACAGCTA
  AAGTTGAGAA CTGTTAAGCG CTGACTTCTG CATTATGCAT TTCTAGGGTA TATATAGGAA
  GCACAGCGAG GAGTCTCTGT AGCCAAAGTT CACTGCTTAT TTAAGGGAGA AGAGGCACCT
  ACAAGTGCAT AGTGAGTAGG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323874151	CHEV_12_4600529	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241541908					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4643723 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4378	CpG island 4378	within coordinates
Gm3625	predicted gene 3625	within coordinates
Gm48678	predicted gene, 48678	1617 bp downstream
Itsn2	intersectin 2	within coordinates
Rr256467	regulatory region 256467	1523 bp distal
Rr265387	regulatory region 265387	within coordinates
Tssr3767	transcription start site region 3767	75 bp upstream
Tssr112557	transcription start site region 112557	1075 bp downstream
Tssr112558	transcription start site region 112558	1050 bp downstream
Tssr112559	transcription start site region 112559	887 bp downstream
Tssr112560	transcription start site region 112560	778 bp downstream
Tssr112561	transcription start site region 112561	636 bp downstream
Tssr112562	transcription start site region 112562	576 bp downstream
Tssr112563	transcription start site region 112563	137 bp upstream
Tssr115637	transcription start site region 115637	1199 bp upstream
Tssr115638	transcription start site region 115638	28 bp upstream
Tssr115639	transcription start site region 115639	within coordinates
Tssr115640	transcription start site region 115640	14 bp downstream
Tssr115641	transcription start site region 115641	53 bp downstream
Tssr115642	transcription start site region 115642	69 bp downstream
Tssr115643	transcription start site region 115643	1430 bp downstream