rs241568102 SNP Detail

Summary

• ID
  rs241568102
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129307406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAAGCAAA GAACACATTT
  CAAGGTTTCT GAATTAAGCA GTAACCATAA ACACTATGCA AAGGAAGAGT AGGGGCTAAT
  GAACTAAGTT ATGATCTACT GTGCTGCTGA TGAAGATGCT GCAGTGGAGT GTGAACAGCA
  ATGGCCTATG AGAGAGGAGA GCCTGATGAC AGAGTAAGAG GATATAGGAT CTTCAGTAGA
  W
  CCTGAACACT TCACTGTCTG GAGAGTCCGT GTGGTGGTAA CGGTGGGTGG GCTCGTCTCC
  CACCCATTGC TTCTATTAGA GTAAAGCTGG AATCAGGGTT CCATGCACCT GTGGCCCTGA
  GTTAACAAAT GCAGCTTAGC ATACCCCACT TTGCTTGCCC CTCCCCACCA CCACTATAGC
  TGACACAATT TTGACACAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	FVB/NJ	MA/MyJ	NOD/ShiLtJ	SJL/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
ss370048838	MGP_WTSI_6_129280461	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	T	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	FVB/NJ	MA/MyJ	NOD/ShiLtJ	SJL/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
rs241568102					SNP	A	A	A	A	A	A	A	A	T	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370048838	MGP_WTSI_6_129280461	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129307406 () rs orientation: forward

Symbol	Name	Function Class
Clec2m	C-type lectin domain family 2, member m	within coordinates
Tssr63594	transcription start site region 63594	1295 bp downstream
Tssr63595	transcription start site region 63595	1343 bp downstream
Tssr63596	transcription start site region 63596	1362 bp downstream