rs241577154 SNP Detail

Summary

• ID
  rs241577154
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:7832691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGCCCAC CCCCCACCTC
  AGTTATCACC CTCCGGACAG AGATAAAGTT TATCTCCAGG CTGGGGGATG TGAGAAGTCC
  TTATCAGCTG CCTCAGTAGA GAAAGTGCTG CTCTAACCAG GAGGCACAGC AGCTGCACCT
  GCTCTCCCGG GCCCAGCCCC TCACCCCAGG TAACTGCCCT ACCCAGCCCT CAGCAAGGCT
  M
  CGTGGGGCCA TTGGAGCAGA GGCAGGACCT GGGGAGCAGA TGTGGTAGTT AGGAGGTTAG
  AGGTAGAGTT TGAGAGTCAG AAGTCTGGGT ATATGGCTGT GGAGTTTAAG GGAAGGAAAA
  AATTGGCTCG ACTTCTCTGA CCCAAGTTCA GAGATCTGTT TGGGGTTTGG AAGTAGGTTA
  GGAAAACAGA TGAATTTAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325888453	CHEV_X_7543578	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241577154					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7832691 () rs orientation: forward

Symbol	Name	Function Class
Gata1	GATA binding protein 1	Intron
Gm14820	predicted gene 14820	within coordinates
Gm39488	predicted gene, 39488	within coordinates
Gm52419	predicted gene, 52419	within coordinates
Rr689701	regulatory region 689701	1890 bp distal
Rr689702	regulatory region 689702	93 bp distal
Rr689703	regulatory region 689703	within coordinates
Rr689704	regulatory region 689704	995 bp proximal
Rr689705	regulatory region 689705	1448 bp proximal
Rr689706	regulatory region 689706	1529 bp proximal
Tssr160483	transcription start site region 160483	86 bp downstream
Tssr162833	transcription start site region 162833	1350 bp downstream
Tssr162834	transcription start site region 162834	1365 bp downstream