rs241594006 SNP Detail

Summary

• ID
  rs241594006
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:111502514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATCGCTT AACAAACTGT
  AAGTACCTGG CTGACGGAAA TAACATCCAA ATGAGGTGGC GACAGAAATA GCAAGGGAAA
  TGATGCAATA AGCTTGGTGT CACACAAGCT TGCGTTCAGA AGCTGCCTAC AGGATATTAA
  AGGGCTGTTG TCACCTGTAA AGCACAGGTC TAACACACCC CTTACCAGAC TATTAGTCAC
  Y
  TACATACAAA CTGCCCACTT AGACTCCTCT GTTTACTAGG GAGGGCTATG TCATACGCTG
  ACCCAGAAAA GCTCTGAGAG CCAAGAGAAT TGGGCACACA TGCTAGTTCT GTAAGTTACA
  GAGGAAATGA CCTTGGAAAA GCAGCTTCAT CCCCCCCCCT ACCCTCAGGC TTCAGTTTTC
  TTGTTTGTAA AATGGGTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387360231	MGP_WTSI_12_112774291	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241594006					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387360231	MGP_WTSI_12_112774291	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:111502514 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5150	CpG island 5150	1367 bp proximal
Gm56529	predicted gene, 56529	512 bp upstream
Gm56546	predicted gene, 56546	937 bp downstream
Gm58608	predicted gene, 58608	1936 bp upstream
Rr403512	regulatory region 403512	1747 bp upstream
Rr473211	regulatory region 473211	536 bp distal
Rr473212	regulatory region 473212	35 bp distal
Rr473213	regulatory region 473213	1446 bp proximal
Tssr115316	transcription start site region 115316	420 bp downstream
Tssr115317	transcription start site region 115317	34 bp downstream
Tssr115318	transcription start site region 115318	within coordinates
Tssr115319	transcription start site region 115319	1112 bp upstream
Tssr117828	transcription start site region 117828	1837 bp downstream