rs241605901 SNP Detail

Summary

• ID
  rs241605901
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94968265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTATTTCTC CTGCCCACCC
  GCCTCCTCTC ATCCTGTTCC CTGCTGGAAG CGGCTCCTCC GCAAAGCCAG ACAGATATTT
  AGTGGTGGTG ATGACAACCC ATCAGAAATA ATAATTAGCA AAGGGCAGCC TTTGTCTCGA
  AGCAGTGAAT GGGACCTCAG CCCCCACAGG TGTGATGCTG GGTGGAGACA GGTGGGCTTG
  R
  CTCAAAGATC TCACTATCCG AGGAAGAATT AGGGAACTCC AAGAGTGTAT GGAATGTTGT
  TTTGGTCTAA CTCAGATTTC CCCTAATGCA GAACAAGACT CATTTTCCCT GAGCATCGTT
  TTCTACATGT TTTTATAATT AAATAAGAAC AGCACATGCA GCAGGCACTA TGCTAACTGC
  TTTACAAATA CTACTTTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323817655	CHEV_11_94938753	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241605901					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94968265 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3575	CpG island 3575	154 bp distal
Gm53645	predicted gene, 53645	within coordinates
Gm57362	predicted gene, 57362	within coordinates
Itga3	integrin alpha 3	638 bp upstream
Rr454944	regulatory region 454944	1783 bp distal
Rr454945	regulatory region 454945	1001 bp distal
Rr454946	regulatory region 454946	1265 bp distal
Rr454947	regulatory region 454947	999 bp distal
Rr454948	regulatory region 454948	736 bp distal
Rr454949	regulatory region 454949	468 bp distal
Rr454950	regulatory region 454950	68 bp distal
Rr454951	regulatory region 454951	197 bp proximal
Rr454952	regulatory region 454952	701 bp proximal
Rr454953	regulatory region 454953	1723 bp proximal
Tssr3652	transcription start site region 3652	823 bp upstream
Tssr104346	transcription start site region 104346	488 bp downstream
Tssr110254	transcription start site region 110254	850 bp upstream
Tssr110255	transcription start site region 110255	784 bp upstream
Tssr110256	transcription start site region 110256	717 bp upstream
Tssr110257	transcription start site region 110257	621 bp upstream