rs241606004 SNP Detail

Summary

• ID
  rs241606004
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:26840750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCACACCTG GGATTTGCCT CACTGCTGAG
  GTCATCTCCC GGGATTGCCA AGAATGACCT CATCCCATAA TCCCCAAGCA GTGCGCAGAT
  GTCTAGGTTT ACCAGGTGGG AAAGGTAAGC ACTCATGGAA GAGTCTCCCT GGGAAGGGGA
  R
  CCCTCTCCCT TGGCTGCTGC TCAGTTGATC ACACAGCAAT TTCCTTACTA GACTGGCAGT
  CCTTTGGAAT TAAGGCTGTG GTAGACATAG GTGCTGAAAA TCAGGAGGGC AGAAACAGGC
  CCATGGCCTG TTTGTCTTTT GCCCACTGGT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325342569	CHEV_17_26758721	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241606004					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26840750 () rs orientation: forward

Symbol	Name	Function Class
Ergic1	endoplasmic reticulum-golgi intermediate compartment 1	Intron
Gm17218	predicted gene 17218	within coordinates
Rr523902	regulatory region 523902	1310 bp distal
Rr523903	regulatory region 523903	317 bp distal
Rr523904	regulatory region 523904	within coordinates
Tssr143257	transcription start site region 143257	255 bp downstream