rs241629378 SNP Detail

Summary

• ID
  rs241629378
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88186642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACCAAGT GAGGGGGCAA
  GGTTGGGTTT ATGACCCTAT TTTTACCTTT TACCATGAAA ATACCTAACA GGACAATGCA
  GGGGCACCTA TGTGAACTTC TTTAACTGCC ACTATCAGAG AGTAAAGAAA CAAAAGTTAA
  TTTTGTCTAA AGAATTTATT TAGCCCCAAC TAACCAGATT ATGGCCATTT CAAGATATGA
  Y
  CGAGGGGAAA AATTGTTATG TGGTATTTTT GCATTTGTTG GTCGGTTGGT TGGTAACAAT
  CTTCAAAGTC CAGGAAGGTC CCTGACAGGA AGGAATGCTC TTTGGGAGCA TCCTGTTCCC
  ATCTCATTCC CCACAGCCAT GTGATTCCTC CACAGCCAGG TGGCACTTTT TTTTTTTTTT
  TTTTTTTTTT TTTTGCAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	BUB/BnJ	C57BL/6J	FVB/NJ	LG/J	NOD/ShiLtJ	QSi5/Ianm	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss350399128	MGP_WTSI_1_90155495	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	BUB/BnJ	C57BL/6J	FVB/NJ	LG/J	NOD/ShiLtJ	QSi5/Ianm	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs241629378					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350399128	MGP_WTSI_1_90155495	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88186642 () rs orientation: forward

Symbol	Name	Function Class
Mroh2a	maestro heat-like repeat family member 2A	within coordinates
Rr18061	regulatory region 18061	within coordinates
Rr35066	regulatory region 35066	within coordinates
Tssr7958	transcription start site region 7958	190 bp upstream
Tssr7959	transcription start site region 7959	212 bp upstream
Tssr7960	transcription start site region 7960	227 bp upstream
Tssr7961	transcription start site region 7961	274 bp upstream
Tssr7962	transcription start site region 7962	428 bp upstream
Tssr7963	transcription start site region 7963	456 bp upstream
Tssr7964	transcription start site region 7964	471 bp upstream
Tssr7965	transcription start site region 7965	507 bp upstream