rs241645273 SNP Detail

Summary

• ID
  rs241645273
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:180829000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCGGGTTC GAGTCCGAAC
  CAGGCAGGAA AAAAGCAGCA GAGCTGGTTT CGACTGGAGC GAAACCACAG ATGTTTGATC
  AAGGAGGTTA GGGCCAATGT GGAACTTTGC AGAACCTAGC ATTGCAGAAG GTAGGGTGGA
  TTCTTGCTCC GCTCGGGGTG GAGTCTAATA GGGAAGGGCG GGACCACTTC GTGCTACTTC
  Y
  GGTCTATCAG GGGAGCTCAA AAGTCTCATG GGTGGGCCCG CTGTGAAGCG GGAGGGGCTT
  TGACGCGCGC CCCGCCTCCC AGTGGTGCGT CTTTTGCGGT GCAGGAAAGC TACTAAGTAC
  GCGCGTGCGC ATAGCGCGCG TGGGTCCTAA AGTGGTGTTT CGTGGGTTAT CTTTGCAAAT
  GGGCTCCGCG GCCTAGCGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356774960	MGP_WTSI_2_180921912	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	C	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241645273					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	C	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356774960	MGP_WTSI_2_180921912	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180829000 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
C330003G01Rik	RIKEN cDNA C330003G01 gene			within coordinates
Cpgi12916	CpG island 12916			within coordinates
Gm75115	predicted gene, 75115			within coordinates
Gm75119	predicted gene, 75119			1927 bp upstream
Ppdpf	pancreatic progenitor cell differentiation and proliferation factor			Intron
				Noncoding-Transcript-Variant
Rr374383	regulatory region 374383			within coordinates
Rr572939	regulatory region 572939			within coordinates
Rr572940	regulatory region 572940			69 bp proximal
Rr572941	regulatory region 572941			140 bp proximal
Rr572942	regulatory region 572942			496 bp proximal
Rr572943	regulatory region 572943			1437 bp proximal
Rr572944	regulatory region 572944			1938 bp proximal
Tssr22287	transcription start site region 22287			68 bp upstream
Tssr22288	transcription start site region 22288			168 bp upstream
Tssr22289	transcription start site region 22289			302 bp upstream
Tssr22290	transcription start site region 22290			390 bp upstream
Tssr22291	transcription start site region 22291			429 bp upstream
Tssr22292	transcription start site region 22292			572 bp upstream
Tssr22293	transcription start site region 22293			670 bp upstream