rs241665668 SNP Detail

Summary

• ID
  rs241665668
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46139393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGCTGCTC TTCCAGAGGT
  CCTGAGTTCA ATTCCCAGAA ACCATATGGT GGCTCACAAC CATCTGTAAA GGAATCTGAT
  TCCATCTTCT GGTGTGTCTG AAGACAGAGC GCTCATGTAC CTAAGATAAG GAAGAAAGGA
  AGGGAGGGAA GGAGGGAGGG AGACAAGGAA GGAGCTAACA ACTCCATGTT GGCCTCTGTC
  R
  TTTCTTCTGA AGCATCAGAG GGGTCTTCAT CCTCAGCTTG GGGATATGAG CCTGTCTGCA
  TCTCACTCAG GCTGACACCT CAGTTGTTTT TGGATTTAGG GTTGGGAGGC TGGCTAAACA
  TGTGGCATCT GGAAAGACAA ATCCCCAAAC CTGGGGGACC AGGGTGAGGT GAAAGGGGGA
  ACCCCTTGGA AAGCAAAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377451197	MGP_WTSI_9_46036178	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241665668					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377451197	MGP_WTSI_9_46036178	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46139393 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	535 bp upstream
Cpgi21701	CpG island 21701	1851 bp proximal
Gm67994	predicted gene, 67994	within coordinates
Tssr84839	transcription start site region 84839	252 bp upstream
Tssr84840	transcription start site region 84840	606 bp upstream
Tssr84841	transcription start site region 84841	738 bp upstream
Tssr84842	transcription start site region 84842	833 bp upstream
Tssr84843	transcription start site region 84843	856 bp upstream
Tssr84844	transcription start site region 84844	1015 bp upstream
Tssr84845	transcription start site region 84845	1067 bp upstream
Tssr84846	transcription start site region 84846	1106 bp upstream
Tssr84847	transcription start site region 84847	1727 bp upstream
Tssr84848	transcription start site region 84848	1814 bp upstream
Tssr84849	transcription start site region 84849	1906 bp upstream
Tssr84850	transcription start site region 84850	1946 bp upstream
Tssr84851	transcription start site region 84851	1990 bp upstream
Tssr89313	transcription start site region 89313	1839 bp downstream
Tssr89314	transcription start site region 89314	1899 bp downstream
Tssr89315	transcription start site region 89315	1913 bp downstream
Tssr89316	transcription start site region 89316	1941 bp downstream
Tssr89317	transcription start site region 89317	1953 bp downstream
Tssr89318	transcription start site region 89318	1975 bp downstream
Tssr89319	transcription start site region 89319	1989 bp downstream
Tssr89320	transcription start site region 89320	1998 bp downstream