rs241678439 SNP Detail

Summary

• ID
  rs241678439
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53379066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGTGATAT CTAAAAGGTG
  TGTCAGTGGC AGCGTTTGAG CATTCTGTAA AGTTAGGGTA TGCCACTTGG AAAGATGAAA
  GAATACATGT ATTTAGCTCT ATACTTATAA GAAGCATAGC CTTTAAAAAT GTATAATATA
  GACAAAAACA GGGCCTTGTA CATTTCTTTT TTGTTTTAAT AAACCTTTTT GTTTATTGAG
  Y
  ATATTCACGC ATATCCATTC TATTTGAATA TGTTGTACAT GTACATGTAC ATACTGTGTG
  TGTGTTTGTG TGTATGTGTT TGTGTGTGTG TGTGTTTTTG TGTGTGTGTG TTTTACTCTG
  TTGGTGAAAA CTCAGTGTAA AGGAGTCATG GTCCTTCATT AAGTTTCCAT ACAAGGCTGG
  TAAATTTAGT TGTGAACTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324042718	CHEV_12_54433270	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241678439					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53379066 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr267616	regulatory region 267616	1667 bp distal
Rr267617	regulatory region 267617	466 bp distal