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rs241680592 SNP Detail
Summary
  • ID
    rs241680592
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr9:45312621 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGCCTGAGTG TGGGGTGAGT
    GTATGCATGG GTGTGGCACT ATGGGGTGTT AGAGGAGTCT GAAGGCAAGG CTACTGAGTG
    CTTAGTGCCT CTCTAGAGCA TACTAGACCT AGTTACCTAC TACATGCAGA CAGGAGAGGA
    GGTGACCTTA GGAAGCTCGG AGGCAGAGTC ACTGGCAAAT TGTTGCCACC TCTGTGGGCT
    R
    TGTGAACATT TAGAAAGGAC ACTTAGGAGC GTCTCTAAGT GAAGCCCAGG AGGAAAAACC
    TGAGGTCAGA GGGAACATTT TGGGAACTCA AAACCCATCT TTGCTAAGAT CCTGAGGCAG
    GAGTGAGCCC TGTAAGGTCA GAGAGCCACT AAGGGGACCC TATGGTTAGA ATGGACAGAA
    AAGTTGGGGT CAGGGTTAGA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss377432843 MGP_WTSI_9_45209406 EVA_MGPV3 EVA_MGPV3 f SNP G G G A A A A A A A A A A A A A A A A G A A A A A A A G G A A G A G A A A A A A G A A A A A A A G A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs241680592 SNP G G G A A A A A A A A A A A A A A A A G A A A A A A A G G A A G A G A A A A A A G A A A A A A A G A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss377432843 MGP_WTSI_9_45209406 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr9:45312621 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Fxyd2 FXYD domain-containing ion transport regulator 2 within coordinates
Gm68814 predicted gene, 68814 within coordinates
Rr195106 regulatory region 195106 580 bp proximal
Rr200381 regulatory region 200381 380 bp proximal
Tssr84781 transcription start site region 84781 1654 bp downstream
Tssr84782 transcription start site region 84782 1605 bp downstream
Tssr84783 transcription start site region 84783 1242 bp upstream
Tssr84784 transcription start site region 84784 1292 bp upstream
Tssr84785 transcription start site region 84785 1819 bp upstream
Tssr84786 transcription start site region 84786 1851 bp upstream
Tssr84787 transcription start site region 84787 1873 bp upstream
Tssr84788 transcription start site region 84788 1904 bp upstream
Tssr84789 transcription start site region 84789 1930 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory