rs241716539 SNP Detail

Summary

• ID
  rs241716539
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:5744647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCAGCCGTG GGCTGTAGGG GTTAGTCTGT
  GGACTCTGAC CTTCCCTGTC GCCGGTGCCC CCGAGCTCTG TGCGGACTGG AAGGTGAAGC
  CGAGTCAGGA GACCAGCGTG CCTGCGGAGA GCTGCAGTGG CCTTGGAGCA TCCAGGGTTC
  K
  CTGAGCTGTG TAAGGGCACC TTGCTTTCTC TAATCCCCCC CCCCCCCGAT TTTGGATTAA
  CAAGTAGATG GGGATCTTTT ATTTACCTTT TTAGTCAAAA GTGTCAGTGG AGATTTTTTT
  TTAATATAAA ACCAATTTGT CGAAAATTGT                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321451821	CHEV_5_5694647	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241716539					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:5744647 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15524	CpG island 15524	within coordinates
Gm40262	predicted gene, 40262	within coordinates
Rr607034	regulatory region 607034	606 bp distal
Rr607035	regulatory region 607035	90 bp distal
Rr607036	regulatory region 607036	within coordinates
Steap2	six transmembrane epithelial antigen of prostate 2	69 bp upstream
Tssr50064	transcription start site region 50064	538 bp upstream
Tssr50065	transcription start site region 50065	335 bp upstream
Tssr50066	transcription start site region 50066	200 bp upstream
Tssr50067	transcription start site region 50067	156 bp upstream
Tssr50068	transcription start site region 50068	108 bp upstream
Tssr50069	transcription start site region 50069	66 bp upstream