rs241722603 SNP Detail

Summary

• ID
  rs241722603
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69493559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGCCTTTC AGCTCTGGGG
  CTTAGCTTCC AATAGCCCCA CCTCTTAAAA CAAACTACCA AAAATCTCTT TAATGCCCAT
  TAACCCCAAT GAAAGGACAC ATTAGTAAAC AGATGGTGGC CCCAGCTCCC TCCTCCATCC
  TCCCCGGGAG ACCAATATCA TGGGTACCCG ATTCATTTTG ATGAAGACAC AGGGCTGCCC
  R
  GTGCTGTAAC CATAGTGGGT AGGGTCCCCA ATGCCAGAGC AATCGCCCAG TTGGGTCCGG
  TTGAACTGGC AGGCACGTTT TGGGTAGTTC AGAACCCCAT TATCAGGTTG CTCATAATAT
  CGCCCTGGAC GGCAGACATC ATTCTTCTGT GCTTGGATGG AGTCGTTGTA AGCTAGGAGG
  TGGGAGGCAG ACAGAGAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383787338	MGP_WTSI_11_69416235	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241722603					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383787338	MGP_WTSI_11_69416235	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69493559 () rs orientation: forward

Symbol	Name	Function Class
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide	within coordinates
Cpgi3137	CpG island 3137	1958 bp proximal
Gm72066	predicted gene, 72066	within coordinates
Rr386229	regulatory region 386229	1277 bp downstream
Rr450036	regulatory region 450036	1622 bp proximal
Tssr102488	transcription start site region 102488	1530 bp downstream
Tssr102489	transcription start site region 102489	1484 bp downstream
Tssr108722	transcription start site region 108722	1975 bp upstream
Tssr108723	transcription start site region 108723	1938 bp upstream
Tssr108724	transcription start site region 108724	1892 bp upstream
Tssr108725	transcription start site region 108725	1870 bp upstream
Tssr108726	transcription start site region 108726	1768 bp upstream
Tssr108727	transcription start site region 108727	1747 bp upstream
Tssr108728	transcription start site region 108728	1703 bp upstream
Tssr108729	transcription start site region 108729	1618 bp upstream
Tssr108730	transcription start site region 108730	1586 bp upstream
Tssr108731	transcription start site region 108731	1544 bp upstream
Tssr108732	transcription start site region 108732	1483 bp upstream
Tssr108733	transcription start site region 108733	268 bp upstream
Tssr108734	transcription start site region 108734	10 bp downstream
Tssr108735	transcription start site region 108735	77 bp downstream
Tssr108736	transcription start site region 108736	115 bp downstream
Tssr108737	transcription start site region 108737	805 bp downstream