rs241730617 SNP Detail

Summary

• ID
  rs241730617
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:93350292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAATTTGC CTGTTTCGCA
  ATTAAAATGG CATTGCTGTA AATATCTCAG TTCTTCTTCA AACATGGAAT AAGACTTAAA
  TCAGGAGCAC TGGCTATTTC AAGCAGAAAT ATCTGTTGAA AATCTTCTTA AATTCCATTG
  TACTGATCAC AAGGATGAAA CCATTCTTAT TCATTCATCT AGAAAGAATT TGTTGTTTTG
  W
  TCAGCACACA ATTAACAAAA ATTTCCAACA ATAGTATGTT TTGAAATGAG TTGTTTCCAT
  AGCTGGGGAA ACAGGACAAC ATATTTTCTT TGCTTTTTAA AAAGATTTAT TTATTTATTT
  TATATGTGAG TACACTGTCG ATCCCTTTAG ACACACCAGA AGAGAGCATC AGATCCCATT
  ACAGATGGGG TTGTGAGCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358876292	MGP_WTSI_3_93246907	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241730617					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358876292	MGP_WTSI_3_93246907	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:93350292 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13475	CpG island 13475	540 bp proximal
Gm37245	predicted gene, 37245	within coordinates
Gm56800	predicted gene, 56800	89 bp downstream
Gm66249	predicted gene, 66249	within coordinates
Tchh	trichohyalin	within coordinates
Tssr960	transcription start site region 960	442 bp upstream
Tssr961	transcription start site region 961	1018 bp upstream
Tssr30345	transcription start site region 30345	596 bp downstream
Tssr30346	transcription start site region 30346	571 bp downstream
Tssr30347	transcription start site region 30347	466 bp upstream
Tssr30348	transcription start site region 30348	505 bp upstream
Tssr30349	transcription start site region 30349	511 bp upstream
Tssr30350	transcription start site region 30350	553 bp upstream
Tssr30351	transcription start site region 30351	584 bp upstream
Tssr30352	transcription start site region 30352	633 bp upstream
Tssr30353	transcription start site region 30353	645 bp upstream
Tssr30354	transcription start site region 30354	663 bp upstream
Tssr30355	transcription start site region 30355	682 bp upstream
Tssr30356	transcription start site region 30356	695 bp upstream
Tssr30357	transcription start site region 30357	793 bp upstream
Tssr30358	transcription start site region 30358	908 bp upstream
Tssr30359	transcription start site region 30359	937 bp upstream
Tssr30360	transcription start site region 30360	967 bp upstream
Tssr30361	transcription start site region 30361	1292 bp upstream
Tssr30362	transcription start site region 30362	1306 bp upstream
Tssr30363	transcription start site region 30363	1449 bp upstream
Tssr30364	transcription start site region 30364	1520 bp upstream
Tssr30365	transcription start site region 30365	1555 bp upstream
Tssr30366	transcription start site region 30366	1607 bp upstream
Tssr30367	transcription start site region 30367	1651 bp upstream
Tssr30368	transcription start site region 30368	1668 bp upstream
Tssr30369	transcription start site region 30369	1681 bp upstream
Tssr30370	transcription start site region 30370	1688 bp upstream
Tssr30371	transcription start site region 30371	1708 bp upstream
Tssr30372	transcription start site region 30372	1721 bp upstream
Tssr30373	transcription start site region 30373	1772 bp upstream
Tssr30374	transcription start site region 30374	1790 bp upstream
Tssr30375	transcription start site region 30375	1803 bp upstream
Tssr30376	transcription start site region 30376	1829 bp upstream
Tssr30377	transcription start site region 30377	1851 bp upstream
Tssr30378	transcription start site region 30378	1884 bp upstream
Tssr30379	transcription start site region 30379	1902 bp upstream
Tssr30380	transcription start site region 30380	1982 bp upstream
Tssr30381	transcription start site region 30381	2000 bp upstream
Tssr34352	transcription start site region 34352	879 bp downstream
Tssr34353	transcription start site region 34353	900 bp downstream
Tssr34354	transcription start site region 34354	910 bp downstream
Tssr34355	transcription start site region 34355	1048 bp downstream
Tssr34356	transcription start site region 34356	1720 bp downstream
Tssr34357	transcription start site region 34357	1765 bp downstream
Tssr34358	transcription start site region 34358	1817 bp downstream
Tssr34359	transcription start site region 34359	1886 bp downstream
Tssr34360	transcription start site region 34360	1967 bp downstream
Tssr34361	transcription start site region 34361	1988 bp downstream