rs241732164 SNP Detail

Summary

• ID
  rs241732164
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95740001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGTCCATG ATCCCCGCCC
  TGCGGGAGTT GGCCAGGTAG GGCCGCGCGT CGTCGCCAGC TTCGAGTCGC CGGGTCTCCT
  CGGCCCGCGC CGCGGCCTGT GGCCGCCGTT CCCTCCCTCA CAGTGGCAGT TGGCCGGAGC
  GCCGTGGCGA CCCACGTGCC GGGGTGACCG TGGCAGCCGC GGCTCGGCTC GCGGGGAGCC
  M
  GTCCACGCGA GCTGCTTCCC GCTTGGCCTC GAGAAGGGTC TCTTCTGGCC ATCTTACCAC
  ACTCGTTTGC TTCCCGAAAA CTTCCCCCGG GTCCTGGTCC TTTGGTCGTT GTTGACGGAA
  TCCATTGGCT GAGGTTTTGT TTGGGAATCA CGGCCCCGCT TCTGAGGGAA GCGCGGCGGT
  TTCTCCTCCG AGAGAGGCCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323104518	CHEV_9_95758367	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241732164					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95740001 () rs orientation: forward

Symbol	Name	Function Class
1700065D16Rik	RIKEN cDNA 1700065D16 gene	66 bp upstream
Atr	ataxia telangiectasia and Rad3 related	within coordinates
Cpgi22158	CpG island 22158	within coordinates
Rr198099	regulatory region 198099	2000 bp proximal
Rr206894	regulatory region 206894	within coordinates
Rr368834	regulatory region 368834	237 bp downstream
Rr401608	regulatory region 401608	574 bp upstream
Tssr86577	transcription start site region 86577	262 bp downstream
Tssr86578	transcription start site region 86578	238 bp downstream
Tssr86579	transcription start site region 86579	within coordinates
Tssr90940	transcription start site region 90940	378 bp upstream
Tssr90941	transcription start site region 90941	72 bp upstream
Tssr90942	transcription start site region 90942	53 bp upstream