TACTCTCCGA GGCCAAGTGC AGAAAACAGC CCGGGGCAGC AACACCTCAC CCCACCCAAG AAATGATTCT CAGCTTTGAG CTCTCAGATG CCCAGGCTTT AGAGCTGAGA GAGACTACAA GTCCTGCTGC TCAGCGAGAC TGGTCCTCTG GATGCAAGAC CGCCCAGATC AGTGCTGCCT GCCCCACTGG GCGCTGATGC R CTGACTGAGA GAAACCTTGC ACTGCAGAGC CCAGAGGGGT AGGGCTGGGG CAGGGAGCAG AGTTGACACC TGAAGAAATA AAAGCTCTGA TTTACCCATT TGTTTTGGAG ATGAGTACTA TTTTTATTAT GTGCAATTCT TTTTTTTTTC ATAATCTAAG GGCACACTAC CAAGAGGAGA AAAAAGTACA GTGAAGAGTG R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss378949012 | MGP_WTSI_9_112138424 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs241738316 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss378949012 | MGP_WTSI_9_112138424 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/G |
Location: Chr9:112064988 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
2900079G21Rik | RIKEN cDNA 2900079G21 gene | within coordinates | ||||||
Arpp21 | cyclic AMP-regulated phosphoprotein, 21 | mRNA-UTR | ||||||
Noncoding-Transcript-Variant | ||||||||
Cpgi22409 | CpG island 22409 | 157 bp distal | ||||||
Gm68368 | predicted gene, 68368 | 403 bp upstream | ||||||
Rr687421 | regulatory region 687421 | 1587 bp distal | ||||||
Rr687422 | regulatory region 687422 | 913 bp distal | ||||||
Rr687423 | regulatory region 687423 | within coordinates | ||||||
Tssr87517 | transcription start site region 87517 | 1669 bp downstream | ||||||
Tssr87518 | transcription start site region 87518 | 1607 bp downstream | ||||||
Tssr91805 | transcription start site region 91805 | 1301 bp upstream | ||||||
Tssr91806 | transcription start site region 91806 | 1276 bp upstream | ||||||
Tssr91807 | transcription start site region 91807 | 1098 bp upstream | ||||||
Tssr91808 | transcription start site region 91808 | 1062 bp upstream | ||||||
Tssr91809 | transcription start site region 91809 | 1017 bp upstream | ||||||
Tssr91810 | transcription start site region 91810 | 953 bp upstream | ||||||
Tssr91811 | transcription start site region 91811 | 724 bp upstream | ||||||
Tssr91812 | transcription start site region 91812 | 418 bp upstream | ||||||
Tssr91813 | transcription start site region 91813 | 384 bp upstream | ||||||
Tssr91814 | transcription start site region 91814 | 78 bp upstream | ||||||
Tssr91815 | transcription start site region 91815 | 55 bp upstream | ||||||
Tssr91816 | transcription start site region 91816 | 26 bp upstream | ||||||
Tssr91817 | transcription start site region 91817 | 9 bp upstream | ||||||
Tssr91818 | transcription start site region 91818 | within coordinates | ||||||
Tssr91819 | transcription start site region 91819 | 20 bp downstream | ||||||
Tssr91820 | transcription start site region 91820 | 46 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 07/22/2025 MGI 6.24 |
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