rs241741820 SNP Detail

Summary

• ID
  rs241741820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141547714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGGCTAT TGAACCCCAG
  GAATCGGCCT GTTTCTACTT ACCCATAGTT GGGATCTTAA GTACGCACAA CCACACCTGG
  CTTCTTTCAC CGGTTCTGAG GACATGTGTC CCCATGCTTG CAAGGTAAGC TGTTTACCAA
  CTGAGTTCCT CAACATCCCC ACCTCATTAT CATTCCTTAA TCACAGTGTA TCATGCTCTA
  Y
  AAACGGGCCA GTCCTCACAG TGATATTCAT TCCTGTTTGG CGAAGGGGAC ATGGACGACT
  GCTCTAATTA TACTTGCTTA ACGCTTTCCC GGGTCCAAAG CACTTCAGAT ATATCTGTGA
  CCATCACCAC AGACCTTATA CTTTACAAAT GAGGAGATAG GCGTTACAGA GGGCCCAGCA
  TGAGCAAAGT GTGTATATCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363530439	MGP_WTSI_4_141376318	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	C	C	C	C	T	C	C	C	T	T	C	C	T	T	T	C	C	C	C	T	C	T	T	C	T	C	T	C	C	T	T	T	C	T	C	C	C	T	C	T	C	T	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241741820					SNP	T	T	T	T	C	C	C	C	T	C	C	C	T	T	C	C	T	T	T	C	C	C	C	T	C	T	T	C	T	C	T	C	C	T	T	T	C	T	C	C	C	T	C	T	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363530439	MGP_WTSI_4_141376318	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141547714 () rs orientation: forward

Symbol	Name	Function Class
Cela2a	chymotrypsin-like elastase family, member 2A	within coordinates
Cpgi15246	CpG island 15246	1326 bp distal
D4Mit32	DNA segment, Chr 4, Massachusetts Institute of Technology 32	404 bp distal
Gm56298	predicted gene, 56298	within coordinates
Tssr40108	transcription start site region 40108	1359 bp downstream
Tssr40109	transcription start site region 40109	1324 bp downstream
Tssr40110	transcription start site region 40110	1301 bp downstream
Tssr40111	transcription start site region 40111	922 bp upstream
Tssr40112	transcription start site region 40112	950 bp upstream
Tssr40113	transcription start site region 40113	979 bp upstream
Tssr40114	transcription start site region 40114	1301 bp upstream
Tssr40115	transcription start site region 40115	1335 bp upstream
Tssr40116	transcription start site region 40116	1375 bp upstream
Tssr44374	transcription start site region 44374	1271 bp upstream
Tssr44375	transcription start site region 44375	1038 bp upstream
Tssr44376	transcription start site region 44376	1020 bp upstream
Tssr44377	transcription start site region 44377	411 bp upstream
Tssr44378	transcription start site region 44378	290 bp upstream
Tssr44379	transcription start site region 44379	949 bp downstream
Tssr44380	transcription start site region 44380	961 bp downstream
Tssr44381	transcription start site region 44381	1317 bp downstream
Tssr44382	transcription start site region 44382	1336 bp downstream
Tssr44383	transcription start site region 44383	1387 bp downstream
Tssr44384	transcription start site region 44384	1854 bp downstream
Tssr44385	transcription start site region 44385	1860 bp downstream
Tssr44386	transcription start site region 44386	1870 bp downstream