rs241742239 SNP Detail

Summary

• ID
  rs241742239
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:116952560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCGTGCAT TTTCGCCTCT
  CTGCTTGGGG AAGGGTATCG AGTGCAGTGC AGAGGCGGCG TAGCAGTCGG ACGTCTCCGA
  GACAGAGTAA TAATGTGGGT AGCTCAAAGT GGAGTAGAAA CTACCCTTTG CCTGCCCTTC
  ACTCCGGCGT CAAACCCGCC CCCCCTCCCC AAACACCTTG AACATCCAGC CACCCTGCCT
  Y
  TACAGCTATT TCGCTCGGAA ACTAATGTGT GGGAGCACCT CCAGCCGCAA ACTGCTCTTG
  AATCCTAATT CGATGACTCA GTGACTCCTA AATACCGATT AAGCCTTCGC CCCCCGCCCC
  ACTTTTTAAA CTTATGACCT ATACTATTCT AGTAAAAAGA TAGGGTTAGG GAAACATTTT
  AAGAATTAAA TAGGATTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss355379025	MGP_WTSI_2_116947815	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs241742239					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355379025	MGP_WTSI_2_116947815	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:116952560 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12072	CpG island 12072	within coordinates
Gm74661	predicted gene, 74661	1121 bp downstream
Rr367269	regulatory region 367269	1214 bp downstream
Rr373730	regulatory region 373730	1768 bp downstream
Rr397194	regulatory region 397194	731 bp upstream
Spred1	sprouty protein with EVH-1 domain 1, related sequence	within coordinates
Tssr19479	transcription start site region 19479	1638 bp downstream
Tssr19480	transcription start site region 19480	1325 bp downstream
Tssr19481	transcription start site region 19481	1285 bp downstream
Tssr19482	transcription start site region 19482	1224 bp downstream
Tssr19483	transcription start site region 19483	1197 bp downstream
Tssr19484	transcription start site region 19484	1174 bp downstream
Tssr19485	transcription start site region 19485	1146 bp downstream
Tssr19486	transcription start site region 19486	1081 bp downstream
Tssr19487	transcription start site region 19487	1034 bp downstream
Tssr19488	transcription start site region 19488	930 bp downstream
Tssr19489	transcription start site region 19489	902 bp downstream
Tssr19490	transcription start site region 19490	680 bp downstream
Tssr19491	transcription start site region 19491	606 bp downstream
Tssr19492	transcription start site region 19492	1143 bp upstream
Tssr19493	transcription start site region 19493	1459 bp upstream
Tssr25740	transcription start site region 25740	794 bp downstream