rs241759342 SNP Detail

Summary

• ID
  rs241759342
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:52092859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTAGAACA AGAAAAATAA
  CATATCGTCC CTCAGGTCAG ACTCAAACCT TCTCTGTGAC AATGAAGAAT AGCATTCTTA
  TTTCTATCCT TGCGGTAAGT GTACTGCTAT GTTCCCCGAG TCTTTGTGCT TGCTACTTCA
  GTCTTTTCAA AATATACCTG CTTATTTCTA GCATGGTCTT TTACATTCTT ATATTCATTC
  W
  TTCATTCATC TGATTTACAT TTTTATTCAT TCATTCATTT GAAACATGTG TACTTTTTTA
  TTTTTTAATC TACTTTCCAG AAACTACAGG TTCTTTTCAA TGGCACTTAT CCCCTAACTA
  GAGAGACATA AAAAGTAGTG TAGGAAAGAA ACATTTGTAA TCATTTAGCA TTTGGTGCTA
  AAAGGTATTT CTGCACATTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss396298842	MGP_WTSI_16_52272609	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241759342					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss396298842	MGP_WTSI_16_52272609	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:52092859 () rs orientation: forward

Symbol	Name	Function Class
Alcam	activated leukocyte cell adhesion molecule	within coordinates
D330040H18Rik	RIKEN cDNA D330040H18 gene	within coordinates
Tssr141407	transcription start site region 141407	1772 bp upstream
Tssr141408	transcription start site region 141408	1718 bp upstream
Tssr141409	transcription start site region 141409	1216 bp upstream
Tssr141410	transcription start site region 141410	1133 bp upstream
Tssr141411	transcription start site region 141411	989 bp upstream
Tssr141412	transcription start site region 141412	966 bp upstream
Tssr141413	transcription start site region 141413	726 bp upstream
Tssr141414	transcription start site region 141414	415 bp upstream
Tssr141415	transcription start site region 141415	286 bp upstream
Tssr141416	transcription start site region 141416	941 bp downstream
Tssr141417	transcription start site region 141417	1463 bp downstream
Tssr141418	transcription start site region 141418	1672 bp downstream