rs241762648 SNP Detail

Summary

• ID
  rs241762648
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67144900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAACTGCTC CCAAGCACTG
  TGCAAGGCTT GGCAGCAACA TCAGTAACAG CCTGTGTCTG CCATACATAG TAACAGATCT
  CTAAATCTCA GCATCATCTT GTCCCGTCCT TTACTTCCCA TCACAGGGGA ACCTTGAGAA
  GATGTGCCGC ACCCTGGAGG ACCAACTGAG TGAAGTGAAG ACCAAGGAGG AGGAGCAGCA
  R
  CGCCTGATCA ATGAACTGTC AACCCAGAAG GCACGCTTGC ACACAGAGTC AGGTCAGTCT
  GTGCCACACT AGCCTGGGAA CAGCAAAGCA TGAGAGGTCT GCCCGATCCT GGACGCTGGG
  GTCTTGCCCT GCACAATGTG TACAAGAGAT GGTTACAAAT GAATGACTCT AAGCTATGAT
  TAGAGGCGAG TTGGGAAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383730862	MGP_WTSI_11_67067576	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241762648					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383730862	MGP_WTSI_11_67067576	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67144900 () rs orientation: forward

Symbol	Name	Function Class
Myh4	myosin, heavy polypeptide 4, skeletal muscle	within coordinates
Tssr3528	transcription start site region 3528	659 bp upstream
Tssr3529	transcription start site region 3529	715 bp upstream
Tssr102201	transcription start site region 102201	556 bp downstream
Tssr102202	transcription start site region 102202	67 bp downstream
Tssr102203	transcription start site region 102203	4 bp downstream
Tssr102204	transcription start site region 102204	381 bp upstream
Tssr102205	transcription start site region 102205	599 bp upstream
Tssr102206	transcription start site region 102206	703 bp upstream
Tssr102207	transcription start site region 102207	1347 bp upstream
Tssr102208	transcription start site region 102208	1517 bp upstream
Tssr102209	transcription start site region 102209	1552 bp upstream
Tssr102210	transcription start site region 102210	1570 bp upstream
Tssr102211	transcription start site region 102211	1580 bp upstream
Tssr102212	transcription start site region 102212	1602 bp upstream
Tssr102213	transcription start site region 102213	1754 bp upstream
Tssr108534	transcription start site region 108534	1470 bp upstream
Tssr108535	transcription start site region 108535	1364 bp upstream
Tssr108536	transcription start site region 108536	20 bp upstream
Tssr108537	transcription start site region 108537	within coordinates
Tssr108538	transcription start site region 108538	484 bp downstream
Tssr108539	transcription start site region 108539	692 bp downstream
Tssr108540	transcription start site region 108540	752 bp downstream
Tssr108541	transcription start site region 108541	1361 bp downstream
Tssr108542	transcription start site region 108542	1522 bp downstream
Tssr108543	transcription start site region 108543	1637 bp downstream