rs241766478 SNP Detail

Summary

• ID
  rs241766478
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:51107050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCAGCCTAC CAAAAGTAAC TCGAGAAGCA ATAGAATAAG
  ACACCTGGTG TGGAGTTCTA GTCTCCACAT ACCCGTATAT ATATCCGCAT ATGCACATAC
  Y
  CTTGCACACA CAAACAAACA CATACACACA TATACACACC CAACGAGTAA TAAGGAATTT
  CAGAATTAAT CCAATATGTA TGTATGTATG TATGTATGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324619654	CHEV_14_51489268	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241766478					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51107050 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi6408	CpG island 6408			684 bp proximal
Gm26782	predicted gene, 26782			659 bp upstream
Rr404075	regulatory region 404075			921 bp upstream
Rr491714	regulatory region 491714			386 bp proximal
Rr491715	regulatory region 491715			781 bp proximal
Rr491716	regulatory region 491716			957 bp proximal
Rr491717	regulatory region 491717			1888 bp proximal
Tep1	telomerase associated protein 1			Intron
				Noncoding-Transcript-Variant
Tssr125373	transcription start site region 125373			762 bp upstream
Tssr128379	transcription start site region 128379			238 bp upstream
Tssr128380	transcription start site region 128380			906 bp downstream
Tssr128381	transcription start site region 128381			964 bp downstream