rs241777954 SNP Detail

Summary

• ID
  rs241777954
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54360919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCCTGGGAA AAGGTGGACT CTGGTTAGCT
  CCTCCATAGG AGCAGGGTTG TCTATTTAAA AAGTAGGATT TGGGGGATTT GGGAAAAAAa
  gaaagagaga gagagagaga gagagggaga gagagagaga gagagagaga gagagagaga
  R
  agagagagag agagagagag agaAACATGC ATCTCAGAAG AACCTGAGAG GATTGTACCT
  GCTCCAGAGA ATCAAGTCAA ACTGTAGAAA TGACAGAGTG GGACAGCTCA GCAGAGTCAG
  GATGAATGTG TGCTCAGGTG ATCCATCCTA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324634971	CHEV_14_54743137	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241777954					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54360919 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
A630038E17Rik	RIKEN cDNA A630038E17 gene	within coordinates
Gm30275	predicted gene, 30275	within coordinates
Rr292699	regulatory region 292699	1119 bp distal
Rr297183	regulatory region 297183	681 bp proximal
Tcra	T cell receptor alpha chain	within coordinates
Tcrd	T cell receptor delta chain	within coordinates
Trdd2	T cell receptor delta diversity 2	1221 bp downstream
Trdj1	T cell receptor delta joining 1	274 bp downstream
Tssr125529	transcription start site region 125529	1971 bp downstream
Tssr125530	transcription start site region 125530	1558 bp downstream
Tssr125531	transcription start site region 125531	1539 bp downstream
Tssr125532	transcription start site region 125532	1526 bp downstream
Tssr125533	transcription start site region 125533	1422 bp downstream
Tssr125534	transcription start site region 125534	1329 bp downstream
Tssr125535	transcription start site region 125535	1315 bp downstream
Tssr125536	transcription start site region 125536	1278 bp downstream
Tssr125537	transcription start site region 125537	1234 bp downstream
Tssr125538	transcription start site region 125538	1214 bp downstream
Tssr125539	transcription start site region 125539	303 bp downstream
Tssr128533	transcription start site region 128533	122 bp downstream
Tssr128534	transcription start site region 128534	1951 bp downstream