rs241782398 SNP Detail

Summary

• ID
  rs241782398
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115150874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGCAGGA CAAAATGGAA
  CTTGCATAAA CACTTAGTCA TCAGTACGCT CTGGAAGTTA CAAACCACCT CGTTCGCAAA
  TTCTAATCCG TATCCGAGTT CCTACTTGGC GAAGAAAGAA GAAGGGCTGA TGGTCTCGGA
  GACCACAGAG TGAAAACACC TGGTGTCCCC AGCCGAAGCC CATCAGAGGG GAAAACCAGC
  M
  CGCAGACCGG GGGACTCCCC GACCTGCGCA GCCTCCACCG GCAACTGGGG ACTTTTCCGG
  GTCCTCTCCC TCCCCACTGT GGGTCTTGAC ATCTACCGTG TGCTGAGGCC CGCGGGTCCC
  CAAAGCGATT GCAAAAGGCA ATGGGAAGGC AGGGAAGGGG GTTTGACAGG CCAGAGGCAG
  AGGAGCGGGC GCGGGTCCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323484102	CHEV_10_114752025	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241782398					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115150874 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2204	CpG island 2204	within coordinates
Gm10752	predicted gene 10752	677 bp upstream
Gm67120	predicted gene, 67120	660 bp upstream
Rab21	RAB21, member RAS oncogene family	within coordinates
Rr402237	regulatory region 402237	495 bp upstream
Rr402238	regulatory region 402238	1191 bp upstream
Rr439192	regulatory region 439192	1695 bp distal
Rr439193	regulatory region 439193	599 bp proximal
Rr439194	regulatory region 439194	612 bp proximal
Rr439195	regulatory region 439195	671 bp proximal
Rr439196	regulatory region 439196	837 bp proximal
Tssr95806	transcription start site region 95806	62 bp upstream
Tssr95807	transcription start site region 95807	114 bp upstream
Tssr95808	transcription start site region 95808	671 bp upstream
Tssr95809	transcription start site region 95809	703 bp upstream
Tssr99318	transcription start site region 99318	82 bp upstream
Tssr99319	transcription start site region 99319	39 bp upstream
Tssr99320	transcription start site region 99320	538 bp downstream
Tssr99321	transcription start site region 99321	577 bp downstream
Tssr99322	transcription start site region 99322	648 bp downstream