rs241786524 SNP Detail

Summary

• ID
  rs241786524
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129273312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTATTTGA AAATCACTAG
  GACAGGGCTG GTGAGATGGC TCAGCGGTTA AGAGCACTGA CTGCTCTTCC AAAGGTCCCG
  AGTTCGAATC CCAGCAACCA CATGGTGGCT CACAACCATC CATAATGAGA TCTGACGCCC
  TCTTCTAGTG TGTCTGAAGA CAACTACAGT GTACTTACAT ATAATAAATA AATCTTTTTT
  W
  AAAAAAAGAA AGAAAATCAT TAGGACACCA GGTGTTGTGG CACATGCATG TAATGCCAGA
  ACTCAGGAGG CTCTGAGTTC GAGACCACCC TGGTCTACAT AGTTCCAGGA CAGGCAGAGC
  TACATAGGAG ACCCTGTCTG GGGGACACAC ACACACACAG AGAGCAGGCA GGTCTCTCTG
  TGCTGTTCTC TTTCAGCCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321312505	CHEV_4_129056763	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241786524					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129273312 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14890	CpG island 14890	1440 bp distal
Gm12980	predicted gene 12980	325 bp upstream
Rr377177	regulatory region 377177	295 bp upstream
Rr600215	regulatory region 600215	1414 bp distal
Rr600216	regulatory region 600216	1938 bp distal
Rr600217	regulatory region 600217	1147 bp distal
Tssr39145	transcription start site region 39145	1896 bp upstream
Tssr43497	transcription start site region 43497	1681 bp upstream
Tssr43498	transcription start site region 43498	1595 bp upstream
Tssr43499	transcription start site region 43499	1569 bp upstream
Tssr43500	transcription start site region 43500	513 bp upstream
Zbtb8a	zinc finger and BTB domain containing 8a	1491 bp upstream