rs241788785 SNP Detail

Summary

• ID
  rs241788785
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7355805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTTCTGAA ATAGTCACTA
  TCAACCTGCT TCTTTTCTTT GGGCCTTTGG ATTGGTTTCT GATATAATTT CATGTTAGAG
  AGTGTTCAAA CTCCATGACT CCTTTCTACA ATTGGCAAAT CCAAAAGATG AAATGAGGAA
  CTGATTTTCT GAGTGACAAA TCACCAGAGG GAGTTGTCAT CAACGCAGTT GTCTTGTCTT
  M
  CTTATCTAAT ATTGAAGAGG GGGATCGTCC CTATCCTCTT CTGAGGAAAA GAGTCACGAG
  CCTCAGTGTT TGCACAGGTG ATACAAGACA AACCAGAATA TGCTAAGGTA GTAGAGCCTC
  TATGTTTTCT TGAATATTGA AAATTCAACA CACAGTTTCA ACTAAAAGCC ACATACTTGT
  GACATAAATT GGCCTGCCAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss376560379	MGP_WTSI_9_7355805	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs241788785					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376560379	MGP_WTSI_9_7355805	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7355805 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr83724	transcription start site region 83724	1909 bp downstream
Tssr83725	transcription start site region 83725	1772 bp downstream
Tssr83726	transcription start site region 83726	1677 bp downstream
Tssr83727	transcription start site region 83727	1007 bp downstream
Tssr83728	transcription start site region 83728	982 bp downstream
Tssr83729	transcription start site region 83729	973 bp downstream
Tssr83730	transcription start site region 83730	491 bp downstream
Tssr83731	transcription start site region 83731	447 bp downstream
Tssr83732	transcription start site region 83732	414 bp downstream
Tssr83733	transcription start site region 83733	366 bp downstream
Tssr83734	transcription start site region 83734	19 bp upstream
Tssr83735	transcription start site region 83735	41 bp upstream
Tssr83736	transcription start site region 83736	1996 bp upstream
Tssr88070	transcription start site region 88070	1027 bp upstream
Tssr88071	transcription start site region 88071	379 bp upstream