rs241796626 SNP Detail

Summary

• ID
  rs241796626
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127819991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTACCTTA TCCTGCAGTT
  TCCCTGGTGA GTTTTATCTC TGAAAGAGTG TAGGGTGGAG AGCAGCCATT CAGGGAGTCA
  GAGAGCCATT CACAGGAAGT TCCAAAAAAT ACATTTGGGG AGCTCTCTCA TTTCCAAGAC
  TGGGTTGAGC AGCTGCTCAA AGGCTGGCAT GGAGGAAATC TTGCTGGGGC CTCCATTTGT
  W
  ATTCTCAGTA AGGAATTCTC CCGGCTCAGA CACAACCCAG CTCTTGAATT AGCACACAGC
  TGTAGCCTCT TCCTATTGTT TAAATAGGCC CAGCCCTATC AGAACTGTTT CATAGTTTAT
  GCAGAATTAG ACATTGCCAT AATCTCATCC ACGTGGCCAT TGGCCATCCT AAGGCAATCT
  TTTTATCCCA TCCAAGGGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373102276	MGP_WTSI_7_135364333	EVA_MGPV3	EVA_MGPV3	f	SNP	A	T	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	T	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241796626					SNP	A	T	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	T	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373102276	MGP_WTSI_7_135364333	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127819991 () rs orientation: forward

Symbol	Name	Function Class
Gm44850	predicted gene 44850	31 bp upstream
Itgad	integrin, alpha D	within coordinates
Tssr75086	transcription start site region 75086	49 bp downstream
Tssr75087	transcription start site region 75087	71 bp downstream