rs241800366 SNP Detail

Summary

• ID
  rs241800366
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:11506594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGGCTTTAG GATAGCCCTG
  CTCCAGTTGT TCAGGACCCA CTTGAAGACA AAGCTGTACC TCTGCTACAT ATGTTCAGGG
  AGGCCTAGGT CCAGCCTGTG TATGCTCTTT GGATGGTGGT TCAGTCTCTG AGAGCCCCAA
  GGGTCCAAGT TAGTTGATTT TACTGGTCTT CCTGTAGAGT TTCTATCCCC TTCAGGGCAG
  M
  AATCCTTCCC CCTACTCTTC CATAAGAGTT CTCAAGCTCC ATTCATTGTT TGACTATGGG
  TGTCTGTATC TGTCTGAATC AGCTGCTGAG TGGAGCCTCT CAGAGGACAG CTTACTCCTG
  TCTACAAGCA TAACAGAGTA TCATTAATAG TGTCATGGAT TGGTGCTTGT CCATGGGATG
  GGTTTCGTGT TGGGCTGGAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382421316	MGP_WTSI_11_11456597	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241800366					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382421316	MGP_WTSI_11_11456597	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:11506594 () rs orientation: forward

Symbol	Name	Function Class
Gm11998	predicted gene 11998	816 bp upstream
Gm29945	predicted gene, 29945	within coordinates
Rr402417	regulatory region 402417	590 bp upstream
Rr442717	regulatory region 442717	232 bp proximal
Rr442718	regulatory region 442718	717 bp proximal
Rr442719	regulatory region 442719	835 bp proximal
Rr442720	regulatory region 442720	1249 bp proximal
Rr442721	regulatory region 442721	1362 bp proximal
Rr442722	regulatory region 442722	1958 bp proximal
Tssr100349	transcription start site region 100349	794 bp upstream
Tssr100350	transcription start site region 100350	807 bp upstream
Tssr100351	transcription start site region 100351	1338 bp upstream
Tssr100352	transcription start site region 100352	1413 bp upstream