rs241800817 SNP Detail

Summary

• ID
  rs241800817
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70705445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGTATGA AGAGCCCACG
  TATCAAAGGT TACATTAGGG AAGGAAGAGG ACACTAACAG TGACTTTCAT TCTCCCCCTC
  TTCCTGGAGG CCCCTGCATT TAGTCCCTCG TGGGCTCATC CACTCAGCAC ACATTTACTA
  AGCATCTTCT CAGCCTACAC TCTGAAGGCA GTGCAGAATA ATGTTAGTGT CCCTTCCCCC
  R
  GTTAATATGC AGTCCAGTTT CCCTGCTCCT TCCCTTTCTC AGTCCACATA AGGATGATGG
  GAAAGGACAG TCACCAAATA GGAGAGGGCA ACCCTTTGCC TTCCTACCTC TTGAGAATGT
  ACATTATTAT CCACTTTTTG AAACTTCTTT TAATTGCTTT TTTTTAATTT GTCTTTTCAA
  ATAGCATAAC CTTGTTCATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368707645	MGP_WTSI_6_70678455	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241800817					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368707645	MGP_WTSI_6_70678455	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70705445 () rs orientation: forward

Symbol	Name	Function Class
Gm30211	predicted gene, 30211	752 bp upstream
Gm68839	predicted gene, 68839	1495 bp upstream
Igk	immunoglobulin kappa chain complex	1707 bp downstream
Igkc	immunoglobulin kappa constant	1707 bp downstream
Rr150202	regulatory region 150202	within coordinates
Rr399686	regulatory region 399686	1650 bp downstream
Tssr1880	transcription start site region 1880	1610 bp downstream
Tssr56957	transcription start site region 56957	1989 bp downstream
Tssr56958	transcription start site region 56958	1973 bp downstream
Tssr56959	transcription start site region 56959	1955 bp downstream
Tssr56960	transcription start site region 56960	1940 bp downstream
Tssr56961	transcription start site region 56961	1924 bp downstream
Tssr56962	transcription start site region 56962	1912 bp downstream
Tssr56963	transcription start site region 56963	1865 bp downstream
Tssr56964	transcription start site region 56964	1854 bp downstream
Tssr56965	transcription start site region 56965	1842 bp downstream
Tssr56966	transcription start site region 56966	1834 bp downstream
Tssr56967	transcription start site region 56967	1814 bp downstream
Tssr56968	transcription start site region 56968	1784 bp downstream
Tssr56969	transcription start site region 56969	1760 bp downstream
Tssr56970	transcription start site region 56970	1741 bp downstream
Tssr56971	transcription start site region 56971	1729 bp downstream
Tssr56972	transcription start site region 56972	1670 bp downstream
Tssr56973	transcription start site region 56973	1659 bp downstream
Tssr56974	transcription start site region 56974	1629 bp downstream
Tssr56975	transcription start site region 56975	1592 bp downstream
Tssr61321	transcription start site region 61321	1952 bp upstream
Tssr61322	transcription start site region 61322	1804 bp upstream
Tssr61323	transcription start site region 61323	1723 bp upstream
Tssr61324	transcription start site region 61324	1646 bp upstream
Tssr61325	transcription start site region 61325	1613 bp upstream
Tssr61326	transcription start site region 61326	1600 bp upstream
Tssr61327	transcription start site region 61327	1574 bp upstream
Tssr61328	transcription start site region 61328	1496 bp upstream