rs241807727 SNP Detail

Summary

• ID
  rs241807727
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:84352756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCTTGTC TCCTGAACCA
  GTTGGTCTGA GCAGTTTGGG TGAACAACTT CCTCTCTCTG AGGCTGTCTC CCCATCTGGG
  GAAAAAAAAA AGACGAAGGT TTAATTTGAG CCCCTTTAAT CTTTACTATG CAAGGCCTGT
  TTGTTGCATG GTCTGTCCCT ATCAGAATTA TTCACGTTGA TTGATCGTGA TTACAGGCCC
  W
  CAGGGACTGG TGGTGAGTCG GTTATCATGG GCTTTCTGAT TTACACTATC GTATGTCTGA
  TGCGTGAGTT TTCTCCCTGT GTTTCTTCTC CTTACAAAAA GTGACCATAG GGCCAACTGT
  CTTGATATGC TCCTTTGATC CCAGGACCAG TCTGAGGCAG GAGAATACTG TTAGTTCAAG
  ACCAGCCTGA GGCTGCATAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381093828	MGP_WTSI_10_83979637	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	T	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241807727					SNP	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	T	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381093828	MGP_WTSI_10_83979637	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:84352756 () rs orientation: forward

Symbol	Name	Function Class
E230014E18Rik	RIKEN cDNA E230014E18 gene	within coordinates
Gm34405	predicted gene, 34405	within coordinates
Rr217062	regulatory region 217062	956 bp distal
Rr229121	regulatory region 229121	within coordinates
Rr229122	regulatory region 229122	1245 bp proximal
Tssr3295	transcription start site region 3295	879 bp upstream
Tssr94890	transcription start site region 94890	177 bp downstream
Tssr94891	transcription start site region 94891	1095 bp upstream