rs241809441 SNP Detail

Summary

• ID
  rs241809441
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79228445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACATGGGT GGGCATGGGC
  AGGGACACTC CTTAGTTAAC CAGGTCTTCC TTTCCATGAT GACTTGGTTT AGACTCCCTG
  TCACACCACT ATGCATGGCT TAGCAAAGTT TACGGTGTGG AATGGGCTGA TGGATACTTA
  ATATTGGTTT ACAAGAACTG ACTGAGTTCA TTAGAGAGGA GGCTGGGTGA AGGCTAGAAC
  Y
  TCCATTGGCA ATGAGAGGCT TGGGGTGAAG GGGGAAAAAA TAGGACTTTG TACACAGGCG
  CACAGTCAGA TGAATTAATG CTCCAGTGGC TGGAGCCTGA GCAAAGAAAG GAGAGCAAGA
  AGCCAGCAGT GAAGGTTAGA GAGACAACCA GGAAGGAGCC AGTCAAGGGG AGGAATGAGA
  CAGAGGCTAT TTAGTAATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383977179	MGP_WTSI_11_79151121	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241809441					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383977179	MGP_WTSI_11_79151121	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79228445 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3366	CpG island 3366	1578 bp proximal
Gm57411	predicted gene, 57411	within coordinates
Gm73396	predicted gene, 73396	within coordinates
Gm73418	predicted gene, 73418	1374 bp upstream
Rr236740	regulatory region 236740	445 bp distal
Rr247290	regulatory region 247290	955 bp proximal
Rr251790	regulatory region 251790	within coordinates
Rr253753	regulatory region 253753	470 bp distal
Rr402772	regulatory region 402772	1742 bp upstream
Tssr103438	transcription start site region 103438	1963 bp upstream
Tssr109477	transcription start site region 109477	1675 bp downstream