rs241811566 SNP Detail

Summary

• ID
  rs241811566
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47015372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTACAAGT TTGTGTGTAA
  AGGAAGACTC GAGGGAGGGG CCTAGGCCAG ATTTGGGCGG AGGAGAGAGA AAGCAGAGCG
  GTTCTAGGTC AGGGGCTTGT CGTGGGGGGG CGGGGGGGGG GAAGGAGGGA CTGTACAGAA
  CTGTGGAGAG GCCGTCTTTT AAGCTGGTGA GGAGAAGAGG GAAGGGGCTG CTCAGGGCGG
  R
  GGTGGGGGAA GTACTGGAGG GAAATGCGGT CTTAAATGAG CACTGTCCCA AACCGTGGGG
  GATCGGGGAC AGATAAAGGC GGGGAGAAAA AGCAAGGGAG TGAGCCGGGA GTGGAGCAGA
  TCTGGAGGGG GCCGGGGATA GGAGCAAAGA GGAAGGGAAG AGGGATAGGT GGGGGGAAAT
  CTGTCCGGGC AAAGACGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss398326764	MGP_WTSI_17_46841395	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs241811566					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398326764	MGP_WTSI_17_46841395	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47015372 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9240	CpG island 9240	112 bp proximal
Gm65134	predicted gene, 65134	741 bp upstream
Ppp2r5d	protein phosphatase 2, regulatory subunit B', delta	within coordinates
Rr339921	regulatory region 339921	within coordinates
Rr370260	regulatory region 370260	499 bp upstream
Tssr148375	transcription start site region 148375	456 bp downstream
Tssr148376	transcription start site region 148376	556 bp downstream