rs241822605 SNP Detail

Summary

• ID
  rs241822605
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97145636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGCGGTGG CCCGCAGGTG
  GCACCCCACC CCGATCTCGG AGCCTGGCTT TAGGGGCTGG GGCGAGGGGC CTGGCGGGCG
  CTGTGCACCG GGTGCTTGCT GGGGTCCCCG CCCGGGTTTG GAGGAGGAGG AGGAGGACAG
  GAGCGAGGGC CGCGGCGCGT TCCCTCGGGC ACCACCGGGG CTTTGCGGGG GGAGGGGGTG
  Y
  GGAGGCGCCG CGGGGACGCC CCCCGGTTCC CTGGGAAAGT TCGAGCCCTT TTCCTAACTC
  GGAGACGGCG GCCCGAGGCA CCGGGCCCAG CTCTAGAAGC AAAGGGGCAG GAAAGAAGGC
  TTCCGGTTGG AATGCACAGA TAAGGGCATT AGCCTTTAAA AAAAATAAAC AAAAAAAACA
  AAAACAAAAA AAATCCAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325076404	CHEV_15_97078186	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241822605					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97145636 () rs orientation: forward

Symbol	Name	Function Class
Amigo2	adhesion molecule with Ig like domain 2	468 bp upstream
Cpgi7616	CpG island 7616	within coordinates
Gm57814	predicted gene, 57814	within coordinates
Pced1b	PC-esterase domain containing 1B	within coordinates
Rr305670	regulatory region 305670	1365 bp proximal
Rr308785	regulatory region 308785	1765 bp proximal
Rr312356	regulatory region 312356	within coordinates
Tssr132852	transcription start site region 132852	751 bp downstream
Tssr132853	transcription start site region 132853	703 bp downstream
Tssr132854	transcription start site region 132854	307 bp downstream
Tssr136109	transcription start site region 136109	498 bp upstream
Tssr136110	transcription start site region 136110	440 bp upstream