rs241825843 SNP Detail

Summary

• ID
  rs241825843
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:111453360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTACAAACT ATGCGGTAAT
  TACATCCTTA ACGTACAATG ATTCCCAAAA AGAGATCTTA TGGGGCATTC TGAGACGGCA
  TATAGAGACT AAGAAGAAAA CTAAGTAACT AAACATCCCC TGAGACACTT GAGCTCCATA
  CAGGTTCAAA AGCTTCCTGC AGATAACTTT TGAAGGAATA CAGAGCAATT TACAACCTCA
  Y
  AGAACAGGGG AGGAAACCCC ACACAGCACA GCCACACCCA AATCTGGGAC CCTGGCATCG
  TCAGGAACAA AATAATGACA TTTTAGTCTG AAGAAATAAA ATAAATAACA GGGATTCTCA
  GGGGACTAGT TTGGGAAAGA TTCCACAAGA ACTCTGTAGA AGCAAAAAAT ACAGCTTTTT
  GTTTTAGTAT GGAAACCAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387359006	MGP_WTSI_12_112725137	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	T	T	T	C	C	T	T	C	C	T	C	T	C	T	T	C	T	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241825843					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	T	T	T	C	C	T	T	C	C	T	C	T	C	T	T	C	T	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387359006	MGP_WTSI_12_112725137	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:111453360 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5148	CpG island 5148	495 bp distal
Gm266	predicted gene 266	1103 bp upstream
Gm40578	predicted gene, 40578	within coordinates
Gm56529	predicted gene, 56529	within coordinates
Rr473191	regulatory region 473191	613 bp distal
Rr473192	regulatory region 473192	150 bp distal
Tssr117821	transcription start site region 117821	1122 bp upstream
Tssr117822	transcription start site region 117822	1100 bp upstream
Tssr117823	transcription start site region 117823	925 bp upstream
Tssr117824	transcription start site region 117824	818 bp upstream