rs241831908 SNP Detail

Summary

• ID
  rs241831908
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:162503842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCAGTCCA GCACAGCCGA
  CCTTAATCAC AACACATCTC TTTCTCTTGT CCCTAACCCC GCCCTACACA CACAGGTGTG
  GGAATCTCTC CCCCTTCTCT AGCTGCCTCC CCTGTTCTCC CTTTCAGAGA GAAATGGAGC
  TTTCCCCCTT TTGCTTCCTG GTCTGAACAA AGACCTGGCT GGGGCTGAAG GCCTAAAGAC
  R
  TAGATCACTG GGCAGTGCCT GCCACAGCCC ACAGGCCTGC CACCAGGGGA GGGATGTGAG
  CCTTGTATAT AAAGGCCTTC GATAAGGACA CCCAAAGATG CTGAAGGGAT TCCTACTTTG
  TAAACACTTT ACTGCCTGCC CAAAGCCCTC CTTCGGTTTA ACAAAGTGTT TCCCCCTCCC
  CATTCCACTC CCTTGTTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320601352	CHEV_2_162487658	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241831908					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:162503842 () rs orientation: forward

Symbol	Name	Function Class
9430021M05Rik	RIKEN cDNA 9430021M05 gene	within coordinates
Cpgi12617	CpG island 12617	229 bp distal
Ptprt	protein tyrosine phosphatase receptor type T	775 bp upstream
Tssr21417	transcription start site region 21417	683 bp downstream
Tssr21418	transcription start site region 21418	662 bp downstream
Tssr21419	transcription start site region 21419	602 bp downstream
Tssr27272	transcription start site region 27272	864 bp upstream
Tssr27273	transcription start site region 27273	832 bp upstream