rs241837822 SNP Detail

Summary

• ID
  rs241837822
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:8452726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGACC AAGAAGAAAA TAAACTTCTA
  Y
  AACATAGAAG GTAGTCCCTA TTTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323553216	CHEV_11_8402729	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241837822					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:8452726 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr442532	regulatory region 442532			1323 bp distal
Rr442533	regulatory region 442533			115 bp proximal
Tns3	tensin 3			Intron
				Noncoding-Transcript-Variant
Tssr106802	transcription start site region 106802			1057 bp downstream
Tssr106803	transcription start site region 106803			1070 bp downstream
Tssr106804	transcription start site region 106804			1160 bp downstream