rs241848725 SNP Detail

Summary

• ID
  rs241848725
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:51445530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAACAAGGT TATTTTATTT
  ATAAGTGTGC TTAGAGTCAA AGAAAATAAC CAAGGAGACC CCTTTCAATT CGAAAGCTAA
  TGCTTATCAG TGTAATGATG CATCATAATT TCAAACAAAT AAAAAATAAA AAAACCGAAT
  GACCACGCTC AAACACTGTG ACCCCAAACT AAGTTTTTAT ATAGCCAGGA CGTGGATTTT
  Y
  GTCCACTGAA CCAGGCTTTA AGCGAAGGCT AACTATGAAA AGTCAGCTAT TTCACTTCCT
  TAAAGTGAAC ACCACGTGCT AAGGATCCGT TGACTTTACC AACAAATTCG AAGATTCCCT
  TAAAAATGCT TATAATTTGA ATTATTTCGA TCCGAGGATC CTTTAAGCAG ATAAAAGTTC
  TGCAATAAAA GGAAAGTAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368292323	MGP_WTSI_6_51418549	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241848725					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368292323	MGP_WTSI_6_51418549	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:51445530 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17402	CpG island 17402			295 bp proximal
Gm67572	predicted gene, 67572			880 bp upstream
Hnrnpa2b1	heterogeneous nuclear ribonucleoprotein A2/B1			Intron
				Noncoding-Transcript-Variant
Rr379347	regulatory region 379347			within coordinates
Rr630212	regulatory region 630212			553 bp distal
Rr630213	regulatory region 630213			390 bp proximal
Rr630214	regulatory region 630214			1212 bp proximal
Tssr56443	transcription start site region 56443			878 bp upstream
Tssr56444	transcription start site region 56444			1633 bp upstream
Tssr56445	transcription start site region 56445			1789 bp upstream
Tssr56446	transcription start site region 56446			1855 bp upstream
Tssr56447	transcription start site region 56447			1871 bp upstream
Tssr56448	transcription start site region 56448			1883 bp upstream
Tssr56449	transcription start site region 56449			1944 bp upstream
Tssr56450	transcription start site region 56450			1960 bp upstream
Tssr56451	transcription start site region 56451			1997 bp upstream
Tssr60941	transcription start site region 60941			1862 bp upstream
Tssr60942	transcription start site region 60942			1715 bp upstream
Tssr60943	transcription start site region 60943			1605 bp upstream
Tssr60944	transcription start site region 60944			1558 bp upstream
Tssr60945	transcription start site region 60945			729 bp upstream
Tssr60946	transcription start site region 60946			81 bp upstream
Tssr60947	transcription start site region 60947			1286 bp downstream
Tssr60948	transcription start site region 60948			1319 bp downstream