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rs241859016 SNP Detail
Summary
  • ID
    rs241859016
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr19:44384310 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GATCTACAGT GATTTTTCTA
TGAGATTTTC TACTTCAACA AAACAGCTCA GAGCGCGTGT TCAATTAACA TAGGGGGGAA
AAAAGGCTCT GATTCTACAA GTGAACTGAG TGTTTGGCAC CTTACACAGC CAGTTCTAAA
AACCAGGCCT CTGGATTGGG CTATAGGGAC AAGAGATGGT TGATGGTTCT AAAATACTGA
Y
GTGATGTTTT CTTCTAGACT TTCCTATAGC ACTGTTGGCC CTGGACTGTG TGACAGAGTG
TTAGGTATCA GGTCTCACCT TAGATATCAG GTCTCAGTCA CTTTTCATCA CACACTGGCT
TCAGGAAGCA GACCCTCTTC CTGAAGTGAG GTCCATTAGC ACTTGCCCAT GTCTCTGGTG
TTTTAACAGA TAAAATGGGG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss402552084 MGP_WTSI_19_44470361 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs241859016 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss402552084 MGP_WTSI_19_44470361 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:44384310 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
D19Mit67 DNA segment, Chr 19, Massachusetts Institute of Technology 67 1284 bp proximal
D19Mit67.2 DNA segment, Chr 19, Massachusetts Institute of Technology 67.2 1134 bp proximal
D19Nds1 DNA segment, Chr 19, Nuffield Department of Surgery 1 1242 bp proximal
Rr548236 regulatory region 548236 1403 bp distal
Rr548237 regulatory region 548237 453 bp distal
Rr548238 regulatory region 548238 998 bp proximal
Scd1 stearoyl-Coenzyme A desaturase 1 within coordinates
Tssr5524 transcription start site region 5524 488 bp downstream
Tssr156606 transcription start site region 156606 537 bp upstream
Tssr156607 transcription start site region 156607 861 bp upstream
Tssr156608 transcription start site region 156608 1270 bp upstream
Tssr156609 transcription start site region 156609 1480 bp upstream
Tssr159446 transcription start site region 159446 1278 bp upstream
Tssr159447 transcription start site region 159447 1103 bp upstream
Tssr159448 transcription start site region 159448 1077 bp upstream
Tssr159449 transcription start site region 159449 1014 bp upstream
Tssr159450 transcription start site region 159450 1000 bp upstream
Tssr159451 transcription start site region 159451 920 bp upstream
Tssr159452 transcription start site region 159452 626 bp upstream
Tssr159453 transcription start site region 159453 557 bp upstream
Tssr159454 transcription start site region 159454 538 bp upstream
Tssr159455 transcription start site region 159455 232 bp upstream
Tssr159456 transcription start site region 159456 113 bp upstream
Tssr159457 transcription start site region 159457 84 bp upstream
Tssr159458 transcription start site region 159458 50 bp upstream
Tssr159459 transcription start site region 159459 31 bp downstream
Tssr159460 transcription start site region 159460 68 bp downstream
Tssr159461 transcription start site region 159461 127 bp downstream
Tssr159462 transcription start site region 159462 155 bp downstream
Tssr159463 transcription start site region 159463 201 bp downstream
Tssr159464 transcription start site region 159464 224 bp downstream
Tssr159465 transcription start site region 159465 248 bp downstream
Tssr159466 transcription start site region 159466 269 bp downstream
Tssr159467 transcription start site region 159467 322 bp downstream
Tssr159468 transcription start site region 159468 570 bp downstream
Tssr159469 transcription start site region 159469 640 bp downstream
Tssr159470 transcription start site region 159470 657 bp downstream
Tssr159471 transcription start site region 159471 674 bp downstream
Tssr159472 transcription start site region 159472 710 bp downstream
Tssr159473 transcription start site region 159473 729 bp downstream
Tssr159474 transcription start site region 159474 754 bp downstream
Tssr159475 transcription start site region 159475 799 bp downstream
Tssr159476 transcription start site region 159476 817 bp downstream
Tssr159477 transcription start site region 159477 837 bp downstream
Tssr159478 transcription start site region 159478 847 bp downstream
Tssr159479 transcription start site region 159479 871 bp downstream
Tssr159480 transcription start site region 159480 899 bp downstream
Tssr159481 transcription start site region 159481 948 bp downstream
Tssr159482 transcription start site region 159482 1048 bp downstream
Tssr159483 transcription start site region 159483 1139 bp downstream
Tssr159484 transcription start site region 159484 1173 bp downstream
Tssr159485 transcription start site region 159485 1299 bp downstream
Tssr159486 transcription start site region 159486 1306 bp downstream
Tssr159487 transcription start site region 159487 1387 bp downstream
Tssr159488 transcription start site region 159488 1404 bp downstream
Tssr159489 transcription start site region 159489 1458 bp downstream
Tssr159490 transcription start site region 159490 1560 bp downstream
Tssr159491 transcription start site region 159491 1595 bp downstream
Tssr159492 transcription start site region 159492 1646 bp downstream
Tssr159493 transcription start site region 159493 1672 bp downstream
Tssr159494 transcription start site region 159494 1692 bp downstream
Tssr159495 transcription start site region 159495 1810 bp downstream
Tssr159496 transcription start site region 159496 1880 bp downstream
Tssr159497 transcription start site region 159497 1893 bp downstream
Tssr159498 transcription start site region 159498 1905 bp downstream
Tssr159499 transcription start site region 159499 1935 bp downstream
Tssr159500 transcription start site region 159500 1966 bp downstream
Tssr159501 transcription start site region 159501 1981 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory