rs241877812 SNP Detail

Summary

• ID
  rs241877812
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70821293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTCTTCT TCCTTTCACA
  GGGGACGGTC CTCTTCACAC TCAGAATCGG CCACGTACTA AGTGCCGCTT CCAACCAATC
  AAGAAGCAGT TAGCTCAGGC CTTTGAGGAG CATCCACTTT CACCAATAAT CTCCAAGCTT
  TTCCCAGCGC CTCACTTTGA GGGGCGAGGC CAATCAGGGA ATGGACCAAT CCGTTCCAGA
  R
  GTGGCATTAG GGAACTGAAA TGATTCACCA ATCGCCTAAG AAGACTCTGG GGAGGGGCAT
  TTCTCATTGG CCGTCGTTCC CGGAAAAGGG CCGGACTGCC ACAGGGAAAA CTACAATTTG
  ATTGGTAGGT ATAATGTTGA CAACAAGGAA CGCGTCTGCC TGGCTCGGAG TGGCAAGGCG
  CGCAACCAAT CGCAGAGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321816168	CHEV_6_70794303	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241877812					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70821293 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17515	CpG island 17515	within coordinates
Eif2ak3	eukaryotic translation initiation factor 2 alpha kinase 3	206 bp upstream
Rr631844	regulatory region 631844	within coordinates
Rr631845	regulatory region 631845	782 bp proximal
Tssr56977	transcription start site region 56977	190 bp upstream
Tssr56978	transcription start site region 56978	274 bp upstream