rs241880816 SNP Detail

Summary

• ID
  rs241880816
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:77353271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTGGGAACG ACTAAATTAG CTGCGCGATT
  GCGGCAGGAA TGCGGCGCGC AGGCACCTGA TCTCGCGCGG TGGCTCCCAT TCTCCGTGTC
  TCTCTTTGGA CCAAGCGCCT CCCGAACCTG TATGCGAGGG ACGGTGGCAG ACACGAGGCA
  Y
  GAACACCCCG CCAGCGCACG CACACTTACT TTTCCCTTTT TACAGCGGAG TTGAGACGCC
  CGCCGGACTT TCGCGCGCTG GACAGGGCGT AGCCGCTCTG GCCTGGCCCT GCCCCCGTCC
  GGCCCCGCCC CCTCAGGTTG ATGGCAGCAG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323755233	CHEV_11_77275947	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241880816					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:77353271 () rs orientation: forward

Symbol	Name	Function Class
Coro6	coronin 6	within coordinates
Cpgi3305	CpG island 3305	within coordinates
Rr247229	regulatory region 247229	within coordinates
Tssr103136	transcription start site region 103136	24 bp downstream
Tssr103137	transcription start site region 103137	7 bp downstream
Tssr103138	transcription start site region 103138	113 bp upstream
Tssr103139	transcription start site region 103139	122 bp upstream
Tssr103140	transcription start site region 103140	160 bp upstream