rs241907170 SNP Detail

Summary

• ID
  rs241907170
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:80365776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTAAGCG TTTAGCCACC
  CCTAAGAAAA CGCTAGGAGG GGAGGCCCTG AGTGGGGTGC GGACAGGTGC GTCCTCTGGA
  ACTACACAAA GGGCCGGCGG CACCGCCACT GAGCCCCTAG CAACTGCACG CAAGCTGCGC
  TCGCGCGCTT TCCGCCGCCC CACGGCGCTC AGGGCGGGAG GCTCGCCGGG AGGGCGGGGC
  R
  GCGCGCGCAG GTCAGCGGCG TAAGCGACAG ACACCCTCGG GCCTGCTCGC GGACGCGGCC
  TGGGAAGCGC GAAGGCAGTT CTAGGTTCGG CACCGCTAGC ATTGTAGGGA TTTGTAGTCC
  GCGAGCCCGT GGGGCACCTC CCCTCCGGGT AGGCCGACCC AGGCGTCCCC GCCCTCTGCA
  CGAGGACTTC CTGCCGCGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375288935	MGP_WTSI_8_82163046	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241907170					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375288935	MGP_WTSI_8_82163046	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:80365776 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20624	CpG island 20624	within coordinates
Gm51579	predicted gene, 51579	within coordinates
Otud4	OTU domain containing 4	529 bp upstream
Rr400987	regulatory region 400987	35 bp upstream
Rr665883	regulatory region 665883	within coordinates
Tssr78137	transcription start site region 78137	204 bp upstream
Tssr78138	transcription start site region 78138	252 bp upstream
Tssr78139	transcription start site region 78139	279 bp upstream
Tssr78140	transcription start site region 78140	345 bp upstream
Tssr78141	transcription start site region 78141	495 bp upstream
Tssr78142	transcription start site region 78142	616 bp upstream
Tssr78143	transcription start site region 78143	1029 bp upstream
Tssr78144	transcription start site region 78144	1048 bp upstream
Tssr78145	transcription start site region 78145	1076 bp upstream
Tssr81884	transcription start site region 81884	430 bp upstream