rs241927037 SNP Detail

Summary

• ID
  rs241927037
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:9068843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAACGGGG ACTGAGCGGT
  GAGTGGTCTG CTTTGCTGGC TGCTCTCTGG CTCTTCCTGC CTATATAGGT GGGGACTGAA
  GAGTCGACTC TGGTGATCAC TACTAAGACC CCGCAGGGAG TGGCTGGAGA GAGGGGTAAA
  AGTTGGCGGA GCGCAAAGCT GTAGGAGCAG CCCGCTCGGG ATGTTCTGCT AGGTGTGCGC
  Y
  GATGACCTCT CTCAGCAGAT GAAGGTGCTG GAGCCACACT GGGGAGACGT GAAGTCCCCC
  GTGTGCGTGT GCGTGTGCGG CGGGGGTCTA GGGGGGAGGG GCTCAGATGA AGCGAGCCCA
  CGCGAGGTAG GTGCAAGCCA GTGAGGGTCG CCCAGGTGTG GGTCGGGCTG CTGACAGGTG
  AGGGGGAACG TAAGAGAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382361442	MGP_WTSI_11_9018846	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241927037					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382361442	MGP_WTSI_11_9018846	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:9068843 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2578	CpG island 2578	within coordinates
Rr385585	regulatory region 385585	779 bp downstream
Rr442636	regulatory region 442636	326 bp distal
Rr442637	regulatory region 442637	within coordinates
Tssr3423	transcription start site region 3423	710 bp downstream
Tssr3424	transcription start site region 3424	702 bp downstream
Tssr100322	transcription start site region 100322	853 bp downstream
Tssr100323	transcription start site region 100323	826 bp downstream
Tssr100324	transcription start site region 100324	752 bp downstream
Tssr100325	transcription start site region 100325	287 bp downstream
Tssr100326	transcription start site region 100326	250 bp downstream
Tssr100327	transcription start site region 100327	209 bp downstream
Tssr100328	transcription start site region 100328	380 bp upstream
Tssr100329	transcription start site region 100329	436 bp upstream
Tssr100330	transcription start site region 100330	1213 bp upstream
Upp1	uridine phosphorylase 1	within coordinates