rs241941161 SNP Detail

Summary

• ID
  rs241941161
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:35027421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTTTAAG CCTGACCGGG
  GGGAGGGGGG GGGGAGGATC TAGCCTAGAG GACAGAGAAC AGAGTAGATC AGACTCATAA
  ACCAGAAAGT CTACCCCTCG GTCTGGGAGG AATGGCAGTG GTACAAGACA CGTTGGCATC
  TCGGGGCTGC CCATAGGTCT CAGCCAGCAA GGGTCTCAGA GAGGCACCTA GAACAGACAT
  R
  GACAAGGGTT CTGCCCCAGC TCTAGGTTAA CTTCTCAGTC TTATCCTAGG CCTTCTCACT
  GCCCATTACC CAGGCAACTT TGAAGCACAG TTGGCCCAAA GACCCCCCCT AATCCCTGGA
  CACAGCCACC CTGCAATTTG GCAAGCCCAC CTTTGGGCTT TGCCTCAGCG ACCTTGCAAC
  TCCAGCACAC AGGCAGACCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322899097	CHEV_9_34923710	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241941161					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:35027421 () rs orientation: forward

Symbol	Name	Function Class
4930581F22Rik	RIKEN cDNA 4930581F22 gene	603 bp upstream
Cpgi21550	CpG island 21550	128 bp proximal
Gm57537	predicted gene, 57537	1075 bp downstream
Rr676432	regulatory region 676432	113 bp proximal
Rr676433	regulatory region 676433	624 bp proximal
Rr676434	regulatory region 676434	738 bp proximal
Rr676435	regulatory region 676435	920 bp proximal
St3gal4	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	within coordinates
Tssr84325	transcription start site region 84325	615 bp upstream
Tssr84326	transcription start site region 84326	805 bp upstream
Tssr88717	transcription start site region 88717	635 bp downstream
Tssr88718	transcription start site region 88718	679 bp downstream
Tssr88719	transcription start site region 88719	850 bp downstream
Tssr88720	transcription start site region 88720	1569 bp downstream