rs241943947 SNP Detail

Summary

• ID
  rs241943947
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:72778057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGCCCTAG ACCCAGGCCG
  AAGCTCTTTA GTGTTGGCCG TTTTCTGTCT CGCTGACCCG GCTTTCAGGG AAAAAAAAAT
  AATGTGTTAA CGGGTTTGGG ACCCGCTAAG TGCTGCCAGA GTTCGTAGTA GGCCTATGGG
  TTCCAGCTCC GTAGATCCGG GATCTGTCTG AGCATCTCTG AGTTCTGAAA ACAGGCCCCG
  Y
  CAGAGCGGGT CTTGGCAGTT TTGGGGTGTG TGAAGACATT GTGTATGGGC GGAGGGGGTT
  TGCTCTAGGT GGAATTCCCT GGGTAGGAAC CAGGCCTTGG GAAAAGGTTA CAAACCTCTC
  CTAGTTAAAC GTTAAAGGAT GAATTAAAAT GCTAATTACT ACGTAGTTGA AGAATTGGAA
  ACGCTGACTG GCTTCTGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324432621	CHEV_13_72767386	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241943947					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:72778057 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5831	CpG island 5831	174 bp distal
Cpgi5832	CpG island 5832	526 bp proximal
Gm20554	predicted gene, 20554	1374 bp upstream
Irx2	Iroquois homeobox 2	within coordinates
Rr281620	regulatory region 281620	within coordinates
Tssr120305	transcription start site region 120305	1143 bp downstream
Tssr120306	transcription start site region 120306	1113 bp downstream
Tssr120307	transcription start site region 120307	1090 bp downstream
Tssr123170	transcription start site region 123170	1433 bp upstream
Tssr123171	transcription start site region 123171	1352 bp upstream
Tssr123172	transcription start site region 123172	1331 bp upstream