rs241944899 SNP Detail

Summary

• ID
  rs241944899
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172300653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCGTAACAG CTACTGTGAA
  TACAGTTGCA GTAAACTTGA ATGTGCAGGA TCACTGCATC TTTCTGACTT AGAGTCTTTT
  GAGTATATTG CCCAGGAATG GTATAGCTAG ATTATATGAT AGTTCTATTT TTAGTTTTAT
  TTTTTTTTAA AGAACCACCA TACTGATTTC CATAGTGACT CAAATTAATT TACATTCCCA
  S
  TAGTTTCAGT TCTACTTCTA GTTTCATTTC TGTTATTGTG ATAAAATATC TTAACAGAAA
  GAAACTTGGA GAAAAAACAG GGTTTTTTTG TTTTGTTTTG TTTTTTGTTT TTTGTTTTTT
  GTTTTTTTGT TTTTTTTTTT TTTGGTAGCT CATGATTCCA GGATATAGTC TAGTCTATCA
  AAGCAAGGAA AACAGTATCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320125578	CHEV_1_174403217	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241944899					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172300653 () rs orientation: forward

Symbol	Name	Function Class
Gm7804	predicted gene 7804	937 bp upstream
Gm70809	predicted gene, 70809	within coordinates
Gm70814	predicted gene, 70814	896 bp downstream
Rr396588	regulatory region 396588	within coordinates
Rr423578	regulatory region 423578	1980 bp proximal